

@1048

14 years 
Peter 
well, make it English…



@1047

14 years 
Peter 
generalized a bit



@1046

14 years 
Peter 
some dox  refs #256



@1044

14 years 
Peter 
fixes #315



@1041

14 years 
Peter 
generalized StrideIterator? to work with Iterators as well  not only …



@1040

14 years 
Peter 
working on #267



@1038

14 years 
Peter 
StrideIterator?  fixes ticket:303



@1037

14 years 
Peter 
some msg when using yat_assert



@1036

14 years 
Peter 
fixes #291



@1029

14 years 
Peter 
removing includes not needed



@1028

14 years 
Peter 
documentation for VectorConstView? and changing name of view functions …



@1027

14 years 
Peter 
going back to previous design in which view and const_view are in …



@1026

14 years 
Peter 
not returning const VectorBase?& in vector and VectorView?



@1017

14 years 
Peter 
passing VectorBase? in matrix  refs #256



@1016

14 years 
Peter 
passing VectorBase? in SVD  refs #256



@1015

14 years 
Peter 
changing class names vectorView => VectorView? and vectorBase => …



@1014

14 years 
Peter 
adding convenient classes for options File



@1011

14 years 
Peter 
removing iterator typedef  that functioality is in base class



@1010

14 years 
Peter 
init some pointers to null and removing conflict



@1009

14 years 
Peter 
merging branch peterdev into trunk delta 1008:994



@1005

14 years 
Peter 
adding conversion function  from string to numerical type



@1004

14 years 
Peter 
adding a wrapper around std::random_shuffle that uses the RNG class. …



@1003

14 years 
Peter 
adding class for Kolmogorov Smirnov test



@1001

14 years 
Peter 
reset errno to zero when it is an expected error



@1000

14 years 
Jari Häkkinen 
trac moved to new location.



@997

14 years 
Peter 
bugfix



@996

14 years 
Peter 
correcting OptionSwitch? so it actually listens to commandline. Also …



@989

14 years 
Peter 
fixed typo



@986

14 years 
Peter 
no comma in help output in case of short flag but no long flag



@985

14 years 
Peter 
minor bug



@984

14 years 
Peter 
implementing refs functions



@983

14 years 
Peter 
typo



@982

14 years 
Peter 
adding description variable for cmd



@981

14 years 
Peter 
adding convenient class for help option



@980

14 years 
Peter 
adding possibility to make option required



@979

14 years 
Peter 
fixing bug in OptionFile?. Dont try to create FileUtil? for option not …



@978

14 years 
Peter 
using std in our vector::shuffle



@975

14 years 
Peter 
adding Option class for argument associated with a file, and fixed …



@974

14 years 
Peter 
improve help output



@972

14 years 
Peter 
well to be correct



@971

14 years 
Markus Ringnér 
Fixed bug so things compile on OS X.



@968

14 years 
Peter 
adding mssing files



@966

14 years 
Peter 
fixing some doxygen warnings



@965

14 years 
Peter 
Adding CommandLine? class. finishes #240



@958

14 years 
Peter 
allowing mixture of weighted and unweighted iterators in vector_distance



@937

14 years 
Peter 
changing name of IteratorTraits? to iterator_traits



@936

14 years 
Peter 
reimplementing yat_assert as a throwing function



@932

14 years 
Peter 
median and percentile functions now take iterators rather than vectors



@928

14 years 
Peter 
removing some includes not needed



@921

14 years 
Jari Häkkinen 
Removed undefined macro on MacOSX. Now the yat_assert compiles.



@919

14 years 
Peter 
fixes #239



@917

14 years 
Peter 
fixes #257



@916

14 years 
Peter 
Sorry this commit is a bit to big.
Adding a yat_assert. The yat …



@914

14 years 
Peter 
refactoring add function in Averagers, refs #246



@910

14 years 
Peter 
impl add function for AveragerWeighted?. The function distinguishes …



@909

14 years 
Peter 
using weighted_iterator_traits, closes #151



@908

14 years 
Peter 
adding IteratorWeighted?.h in Makefile.am (so file is included in …



@899

14 years 
Peter 
changed euclidean to fulfill design criteria, removes …



@898

14 years 
Markus Ringnér 
A first suggestion for how to adress #250. Also removed contamination …



@897

14 years 
Peter 
removing keyword that was mistakingly added before



@896

14 years 
Peter 
…



@895

14 years 
Peter 
Another try, hm…



@894

14 years 
Peter 
setting missing property Id on files



@890

14 years 
Markus Ringnér 
Refs #245 #246 #247



@884

14 years 
Peter 
some documentation



@883

14 years 
Peter 
fixing problems with iterator > const_iterator conversion



@882

14 years 
Peter 
fixing includes  sorry about that



@881

14 years 
Peter 
merged constIterator into Iterator and added an extra template …



@880

14 years 
Peter 
refs #244



@879

14 years 
Markus Ringnér 
Added support to utility::vector for gslfunctions that finds indices …



@878

14 years 
Markus Ringnér 
Problem with previous checkin fixed



@877

14 years 
Markus Ringnér 
This revision breaks the vector_test. I know this is against the rules …



@875

14 years 
Peter 
rewriting SW algo, making code clearer, and perhaps removing a few bugs...?



@873

14 years 
Peter 
fixing some docs



@872

14 years 
Peter 
Some docs for TypeInfo?



@869

14 years 
Peter 
Adding SmithWaterman local alignment and modified ssearch to use this …



@867

14 years 
Peter 
adding function doing a SSEARCH between two strings



@865

14 years 
Peter 
changing URL to http://trac.thep.lu.se/trac/yat



@861

14 years 
Peter 
adding class to store and compare std::type_info



@842

14 years 
Peter 
fixed typo in error msg



@833

14 years 
Jari Häkkinen 
Addresses #217. Fixed so that 'make distcheck' compiles but tests fail …



@831

15 years 
Peter 
Refs #185.



@830

15 years 
Jari Häkkinen 
Fixes #206.



@829

15 years 
Jari Häkkinen 
Fixes #173.



@825

15 years 
Peter 
removed minmax functions and moved shuffle into vector.*



@813

15 years 
Peter 
Predict in NBC. Fixes #57



@811

15 years 
Peter 
dox



@810

15 years 
Jari Häkkinen 
Changed to obey the general wisdom: If you write the same code snipet …



@809

15 years 
Jari Häkkinen 
Fixed spelling.



@808

15 years 
Peter 
previous argument was invalid, but here is an implementation. Fixes #205



@805

15 years 
Peter 
removed Option and Commandline. Not mature enough for a release. …



@797

15 years 
Jari Häkkinen 
Fixes #191. This is the best that can be done with the current design.



@796

15 years 
Jari Häkkinen 
Fixes #201.



@794

15 years 
Peter 
making yat compile



@792

15 years 
Jari Häkkinen 
Addresses #193. matrix now works as outlined in the ticket
discussion. …



@791

15 years 
Jari Häkkinen 
Addresses #193. Added missing implementations.



@790

15 years 
Jari Häkkinen 
Addresses #193. Fixing doxygen docs, and operator=.



@789

15 years 
Jari Häkkinen 
Addresses #193. vector now works as outlined here. Added some …



@788

15 years 
Jari Häkkinen 
Improved comparison operator and equal function doxygen doc. Added for …



@787

15 years 
Peter 
removed v_const in vector since it never used for anything but only …


