source: trunk/yat/utility

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Diff Rev Age Author Log Message
(edit) @3751   3 years Peter adjust license text to be same as in other files
(edit) @3749   3 years Peter docs: convert: add pointer to std::to_string
(edit) @3748   3 years Peter declare SVD constructor explicit; fixes #906
(edit) @3746   3 years Peter new wrapper function around posix function 'symlink'
(edit) @3743   4 years Peter merge release 0.15.1 into trunk
(edit) @3738   4 years Peter leftover from r3736
(edit) @3736   4 years Peter - add move constructor in SVD and PCA - remove some unneeded …
(edit) @3735   4 years Peter mention std::swap in docs
(edit) @3730   4 years Peter new function print_what() to print error message from std::nested_exception
(edit) @3729   4 years Peter optimisation; insert with hint
(edit) @3722   4 years Peter closes #898 and #903
(edit) @3721   4 years Peter Make assignment thread safe by locking both lhs and rhs. Avoid locking …
(edit) @3719   4 years Peter make copy constructor thread safe by applying a lock on other's mutex
(edit) @3718   4 years Peter when compiling in cxx03 avoid warning: in C++03 a class-key must be …
(edit) @3717   4 years Peter factor out common code in Queue and PriorityQueue? into a shared base …
(edit) @3702   4 years Peter update copyright years
(edit) @3698   4 years Peter merge release 0.14.4 into trunk
(edit) @3694   4 years Peter Call throw_if_error in more functions to propagate the error as soon …
(edit) @3691   4 years Peter always declare move constructors with noexcept unless constructor may …
(edit) @3689   4 years Peter add function clear in PriorityQueue? and Queue as well as a push …
(edit) @3687   4 years Peter Create thread_group inside the scope of operator() instead of as a …
(edit) @3686   4 years Peter only send jobs to queue if they have been submitted
(edit) @3685   4 years Peter prefer atomic member since shared between Scheduler and JobHandler?
(edit) @3684   4 years Peter add a comment about calling Scheduler::wait in destructor and the …
(edit) @3683   4 years Peter fix dox typos
(edit) @3682   4 years Peter update copyright years
(edit) @3681   4 years Peter closes #896 Reimplement Scheduler. It now spawns a specific thread to …
(edit) @3680   4 years Peter accessing data in 'rhs' object directly is not thread safe; prefer …
(edit) @3679   4 years Peter new function Scheduler::jobs
(edit) @3678   4 years Peter docs
(edit) @3673   4 years Peter add spaces and quotation around file names in exception message
(edit) @3670   5 years Peter update copyright years
(edit) @3668   5 years Peter avoid duplicated code
(edit) @3666   5 years Peter configure.ac: add --disable-cxx11 in --help output Change default …
(edit) @3661   5 years Peter update copyright years
(edit) @3657   5 years Peter new function inverse_svd to calculate inverse of Matrix using SVD. …
(edit) @3656   5 years Peter comment typo
(edit) @3655   5 years Peter new class DiagonalMatrix?
(edit) @3654   5 years Peter Basic implementation of transpose(Expression). closes #880
(edit) @3653   5 years Peter closes #885. Change interface of MatrixExpression? so we can assign …
(edit) @3652   5 years Peter add missing file from r3651
(edit) @3651   5 years Peter
(edit) @3650   5 years Peter closes #821. 'union' is not available i C++, so function is called …
(edit) @3649   5 years Peter added functions includes and overlap for Segment
(edit) @3643   5 years Peter remove trailing spaces
(edit) @3642   5 years Peter put YAT_HAVE_LOG2 inside CXX11 PP guards, and fix typos in how guards …
(edit) @3640   5 years Peter use std::log2 when available
(edit) @3639   5 years Peter new function getvector. Combination of getline and split.
(edit) @3624   5 years Peter docs: add relates tags, so operators show up in Matrix and Vector classes.
(edit) @3623   5 years Peter merge release 0.14.1 into trunk move functions 'create_gsl_vector' …
(edit) @3610   5 years Peter negation operator for Vector and Matrix
(edit) @3609   5 years Peter operator+= and operator-= for Matrix MatrixExpression?
(edit) @3608   5 years Peter operator+= and operator-= for VectorMutable? and VectorExpression?
(edit) @3607   5 years Peter fix compilation errors
(edit) @3606   5 years Peter don't allow assignment of vector and matrix expressions
(edit) @3605   5 years Peter A first go at implementing template expression in order to provide …
(edit) @3601   5 years Peter introduce two macros, YAT_WITH_CXX11 and YAT_WITHOUT_CXX11, very much …
(edit) @3598   5 years Peter implement make_segment. closes #834
(edit) @3597   5 years Peter closes #828, function convert_try
(edit) @3596   5 years Peter move constructor and assignment in MatrixWeighted?. Remove declaration …
(edit) @3595   5 years Peter implicit conversion from VectorView? to VectorConstView?. closes #474
(edit) @3592   5 years Peter guard move assignment
(edit) @3591   5 years Peter fixes #877 Generalize YAT_CXX_RVALUE into YAT_CXX_TRY_CXX11 and use …
(edit) @3589   5 years Peter move assignment for Vector; refs #878
(edit) @3587   5 years Peter move constructor for vector; refs #878 and #474
(edit) @3585   5 years Peter move constructor and move assignment for utility::Matrix; refs #878
(edit) @3581   5 years Peter refs #878 Make configure try to turn on compiler switches (such as …
(edit) @3579   5 years Peter merge release 0.14 into trunk
(edit) @3550   5 years Peter Update copyright years. Happy New Year
(edit) @3548   5 years Peter The concept 'Distance' now requires that operator() works on iterator …
(edit) @3542   5 years Peter fix sort_index so it works with iterators that are …
(edit) @3536   5 years Peter remove a trailing space
(edit) @3534   5 years Peter move test::weighted_iterator_archetype to …
(edit) @3521   5 years Peter refs #803 In WeightIterator? and DataIterator? require that BASE models …
(edit) @3519   5 years Peter remove trailing ws
(edit) @3510   6 years Peter doc type requirements. refs #803
(edit) @3509   6 years Peter concept checks in MergeIterator?. refs #803
(edit) @3508   6 years Peter make thread assignment operator thread safe in Queue and PriorityQueue?
(edit) @3507   6 years Peter refs #865 and refs #803. Concept checks for binary_weight.
(edit) @3506   6 years Peter refs #803. require readable iterator rather than input iterator.
(edit) @3501   6 years Peter remove training spaces
(edit) @3498   6 years Peter remove trailing spaces
(edit) @3489   6 years Peter remove spaces
(edit) @3488   6 years Peter add function compare_3way(segment, element)
(edit) @3484   6 years Peter implement InBamFile? functions mapped, unmapped, and n_no_coordinate …
(edit) @3482   6 years Peter docs
(edit) @3475   6 years Peter closes #859 New class handling Fasta files that have an index file …
(edit) @3467   6 years Peter add VectorMutable? assignment operator to the API (using already …
(edit) @3466   6 years Peter closes #842. Document how to combine compose_f_gx_hy, PairFirst?, and …
(edit) @3462   6 years Peter add function to reverse an Aligner::Cigar
(edit) @3461   6 years Peter docs
(edit) @3460   6 years Peter prefer boost:: traits (rather than std::), clarify that iterators must …
(edit) @3459   6 years Peter utility::WeightedIterator? is now always tagged as …
(edit) @3457   6 years Peter remove ws
(edit) @3456   6 years Peter docs: add missing word
(edit) @3455   6 years Peter update copyright years
(edit) @3451   6 years Peter add relates dox tag
(edit) @3450   6 years Peter closes #849
(edit) @3449   6 years Peter remove extra spaces
(edit) @3439   6 years Peter merge release 0.13 into trunk
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