source: trunk/yat

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Diff Rev Age Author Log Message
(edit) @2523   10 years Peter added function to retrieve stored oddsratio in Fisher
(edit) @2516   10 years Peter use compiler generated constructor
(edit) @2515   10 years Peter avoid inline
(edit) @2514   10 years Peter correct includes
(edit) @2513   10 years Peter prefer init member variables
(edit) @2512   10 years Peter avoid inlining
(edit) @2511   10 years Peter docs typo
(edit) @2510   10 years Peter added TukeyBiweightEstimator?. closes #666
(edit) @2509   10 years Peter avoid inlined funtions
(edit) @2508   10 years Peter adding a functor calculating Tukey Biweight. refs #666
(edit) @2506   10 years Peter remove dead declaritions
(edit) @2503   10 years Peter avoid long line
(edit) @2502   10 years Peter mad: avoid copying data
(edit) @2496   10 years Peter benjamini-hochberg: avoid crash when input is empty range. Speed-up …
(edit) @2482   11 years Peter new class GFF. closes #647
(edit) @2480   11 years Peter improve error message
(edit) @2476   11 years Peter new function benjamini_hochberg. closes #293
(edit) @2472   11 years Peter fixed some docs errors
(edit) @2470   11 years Peter merge patch release 0.7.2 into trunk
(edit) @2459   11 years Peter make exception inherit from yat::utility::runtime_error rather than …
(edit) @2458   11 years Peter Always detect '--help' (fixes #637). Change CommandLine::parse so the …
(edit) @2451   11 years Peter update copyright years
(edit) @2443   11 years Peter simplify code
(edit) @2441   11 years Peter docs typo
(edit) @2435   11 years Peter include version.h in distribution as it is no longer built (refs #2431)
(edit) @2434   11 years Peter remove svn prop 'svn:executable' from split.cc and split.h
(edit) @2433   11 years Peter remove stray lines
(edit) @2432   11 years Peter merge r2430 from 0.7-stable to trunk in order to avoid doxygen warning …
(edit) @2431   11 years Peter fixes #620. Move version defines from 'version.h' to …
(edit) @2426   11 years Peter closes #656: convert from numeric to string
(edit) @2415   11 years Peter improve Centralizer docs. fixes #652
(edit) @2414   11 years Peter correct include as mandated by our coding guideline
(edit) @2411   11 years Peter merge patch release 0.7.1 into trunk
(edit) @2389   11 years Peter adding some missing since tags
(edit) @2388   11 years Peter add doxygen tag relates
(edit) @2387   11 years Peter avoid long lines
(edit) @2386   11 years Peter avoid referring to data file in a function that works on a stream
(edit) @2385   11 years Peter doc typo
(edit) @2384   11 years Peter updating copyright years
(edit) @2382   11 years Peter merged patch release 0.6.3 into trunk.
(edit) @2377   11 years Peter docs typo
(edit) @2375   11 years Peter improve docs for WeightedIterator? and DataWeightProxy? and add some …
(edit) @2374   11 years Peter changing value_type to const double (or const DataWeight?) in …
(edit) @2373   11 years Peter adding docs on type requirements in Container2DIterator. Adding some …
(edit) @2372   11 years Peter adding concept checks merge
(edit) @2371   11 years Peter adding concept checks in RowNormalizer? and ColumnNormalizer?
(edit) @2369   11 years Peter fixes some issues in class Codon and extending tests
(edit) @2368   11 years Peter new class omic::Codon
(edit) @2366   11 years Peter New class GenomicPosition?
(edit) @2365   11 years Peter refs #623
(edit) @2363   11 years Peter fixing some leftover errors. refs #640
(edit) @2362   11 years Peter more tests for SegmentMap?. closes #640
(edit) @2361   11 years Peter base class should always have virtual destructor (or non-virtual …
(edit) @2360   11 years Peter refs #640. adding a functor in SegmentTree? to tranlate a value_type to …
(edit) @2359   11 years Peter New functor Identity that returns passed argument
(edit) @2358   11 years Peter move most of SegmentSet? impl to a base class SegmentTree? and implement …
(edit) @2357   11 years Peter use compare(Segment, Segment) as comparator in SegmentSet? which allows …
(edit) @2356   11 years Peter adding more types required to conform to 'Unique Sorted Associated …
(edit) @2355   11 years Peter added some more types to SegmentSet?'s public interface
(edit) @2352   11 years Peter fixes #645. error message is now: invalid argument --bar'
(edit) @2351   11 years Peter remove private function not used anymore
(edit) @2348   11 years Peter allow changing description after construction.
(edit) @2347   11 years Peter avoid double colon (: :) in unrecognized option error message
(edit) @2342   11 years Peter adding missing files. refs #377
(edit) @2341   11 years Peter New namespace omic and new class omic::DNA. closes #377
(edit) @2340   11 years Peter closes #627
(edit) @2338   11 years Peter adding an archetype class for distance concept and use that class in …
(edit) @2337   11 years Peter missing includes
(edit) @2336   11 years Peter prefer lines shorter than 80 characters (again)
(edit) @2335   11 years Peter prefer lines shorter than 80 characters
(edit) @2334   11 years Peter fixes #625
(edit) @2333   11 years Peter fixes #556
(edit) @2331   11 years Peter adding missing since tag
(edit) @2330   11 years Peter tiny docs typo
(edit) @2325   11 years Peter prefer using std::swap and avoid long lines
(edit) @2324   11 years Peter new class KernelPCA. closes #639
(edit) @2323   11 years Peter removing some out-commented code and avoid using namespace ::utility …
(edit) @2321   11 years Peter adding missing include
(edit) @2316   11 years Peter remove includes not needed
(edit) @2313   11 years Peter minor doc typo
(edit) @2311   11 years Peter porting r2310 to trunk. Fixing warnings from doxygen 1.7.1 so 'make …
(edit) @2305   11 years Peter new function: split(3)
(edit) @2303   11 years Peter missing include
(edit) @2302   11 years Peter using boost function in to_lower and to_upper to make them respect the …
(edit) @2296   11 years Peter class SegmentSet?: added function clear and fixed bug in insert. …
(edit) @2294   11 years Peter refs #635. fix return type (int) in compare_3way and add some more …
(edit) @2293   11 years Peter adding a function that takes intersection of two Sections. refs #635
(edit) @2292   11 years Peter always use Compare functor in Segment (not std::less)
(edit) @2291   11 years Peter refs #635. New classes Segment and SegmentSet?.
(edit) @2290   11 years Peter fixing type. files belong to yat
(edit) @2288   11 years Peter avoid confusing doxygen
(edit) @2287   11 years Peter hide private class in docs (fixes #628) and chnage docs to point to …
(edit) @2286   11 years Peter replace class PtrCompare? with two function make_ptr_compare that …
(edit) @2285   11 years Peter adding a class Dereferencer, a functor that returns *argument. refs #632
(edit) @2284   11 years Peter fix doc typo
(edit) @2283   11 years Peter fix Centralizer so it works with mixed iterators. Make it clear that …
(edit) @2282   11 years Peter document and test that DataIterator? and WeightIterator? works …
(edit) @2278   11 years Peter corrected comment reflecting that we do implement assignment in …
(edit) @2275   11 years Peter improve docs for compose_functors
(edit) @2274   11 years Peter adding functor f_gxy and f_gx (similar to f_gx_hy) and adding some …
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