source: trunk/yat

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Diff Rev Age Author Log Message
(edit) @871   15 years Peter minor docs fix
(edit) @869   15 years Peter Adding Smith-Waterman local alignment and modified ssearch to use this …
(edit) @868   15 years Peter fixes ticket:236
(edit) @867   15 years Peter adding function doing a SSEARCH between two strings
(edit) @866   15 years Markus Ringnér refs #236. EnsembleBuilder::predict bug fixed for matrix-based …
(edit) @865   15 years Peter changing URL to ​http://trac.thep.lu.se/trac/yat
(edit) @863   15 years Markus Ringnér Fixed bug in FeatureSelectorIR that resulted in incorrect results!.
(edit) @862   15 years Markus Ringnér Fixed bug in InputRanker? that sometimes gave rise to a bus error …
(edit) @861   15 years Peter adding class to store and compare std::type_info
(edit) @860   15 years Peter fixes #149 - Target constructor from Target and vector<string>
(edit) @859   15 years Peter updated copyright
(edit) @858   15 years Peter refs #148 in EnsembleBuilder?
(edit) @857   15 years Peter refs #148 in NCC
(edit) @856   15 years Markus Ringnér The SNR score is now ok again and renamed SNRScore. Fixes #235"
(edit) @852   16 years Jari Häkkinen Fixes #228.
(edit) @851   16 years Jari Häkkinen Fixes #229.
(edit) @848   16 years Jari Häkkinen Merged log:/branches/0.3.1#838:846 to trunk.
(edit) @842   16 years Peter fixed typo in error msg
(edit) @837   16 years Peter Fixed include to be correct also when being case-sensitive. refs #220 …
(edit) @833   16 years Jari Häkkinen Addresses #217. Fixed so that 'make distcheck' compiles but tests fail …
(edit) @832   16 years Peter Refs #217 cleaning up makefile.am
(edit) @831   16 years Peter Refs #185.
(edit) @830   16 years Jari Häkkinen Fixes #206.
(edit) @829   16 years Jari Häkkinen Fixes #173.
(edit) @828   16 years Peter Generalized ConsenusInputRanker?, Fixes #151
(edit) @827   16 years Peter added Functors to be used in CIR. Refs #151
(edit) @826   16 years Peter documentation and some minor fixes Fixes #135
(edit) @825   16 years Peter removed minmax functions and moved shuffle into vector.*
(edit) @823   16 years Peter BootstrapSampler?. Fixes #134
(edit) @822   16 years Peter redesigned tTest fixes #212 and #156
(edit) @821   16 years Peter Modified ROC class to use AUC class in calculation of ROC area. Refs #101
(edit) @820   16 years Peter Changed name again. ROCScore is now called AUC. Also fixed several …
(edit) @818   16 years Peter It depends on the use case here, but I think I agree so hist_ is no …
(edit) @817   16 years Peter Fixes #143
(edit) @815   16 years Peter added constructor for DataLookup1D from a utility::vector
(edit) @813   16 years Peter Predict in NBC. Fixes #57
(edit) @812   16 years Peter implemented NBC predict. Have to check what happens in the weighted …
(edit) @811   16 years Peter dox
(edit) @810   16 years Jari Häkkinen Changed to obey the general wisdom: If you write the same code snipet …
(edit) @809   16 years Jari Häkkinen Fixed spelling.
(edit) @808   16 years Peter previous argument was invalid, but here is an implementation. Fixes #205
(edit) @805   16 years Peter removed Option and Commandline. Not mature enough for a release. …
(edit) @803   16 years Peter removed Microarray namespce and its conents
(edit) @798   16 years Jari Häkkinen Removed unnecessary #include. Added tests for random number distributions.
(edit) @797   16 years Jari Häkkinen Fixes #191. This is the best that can be done with the current design.
(edit) @796   16 years Jari Häkkinen Fixes #201.
(edit) @794   16 years Peter making yat compile
(edit) @792   16 years Jari Häkkinen Addresses #193. matrix now works as outlined in the ticket discussion. …
(edit) @791   16 years Jari Häkkinen Addresses #193. Added missing implementations.
(edit) @790   16 years Jari Häkkinen Addresses #193. Fixing doxygen docs, and operator=.
(edit) @789   16 years Jari Häkkinen Addresses #193. vector now works as outlined here. Added some …
(edit) @788   16 years Jari Häkkinen Improved comparison operator and equal function doxygen doc. Added for …
(edit) @787   16 years Peter removed v_const in vector since it never used for anything but only …
(edit) @785   16 years Peter I think it is clearer if gsl_vector_const_view is declared as const …
(edit) @784   16 years Jari Häkkinen References #155. Removed potential null pointer usage. Some unwanted …
(edit) @783   16 years Jari Häkkinen Fixes #155. Added asserts to check vectors in all non-const functions …
(edit) @782   16 years Jari Häkkinen Fixes #195.
(edit) @781   16 years Peter changing name to ROCScore and also added some cassert includes
(edit) @780   16 years Jari Häkkinen Fixed exception message.
(edit) @779   16 years Peter Refs #101
(edit) @778   16 years Peter added ROCscore class. refs #101
(edit) @777   16 years Peter Changed Fisher interface dramatically. No longer inherited from Score. …
(edit) @776   16 years Jari Häkkinen Fixed typos.
(edit) @775   16 years Jari Häkkinen Fixes #200.
(edit) @774   16 years Jari Häkkinen Fixes #194.
(edit) @773   16 years Jari Häkkinen Fixes #138. Removed add, sub, scale and added appropriate operators.
(edit) @772   16 years Peter fixes #126 and added some functions in AveragerPair? and …
(edit) @768   16 years Peter addresses #57
(edit) @767   16 years Peter Fixes #65
(edit) @766   16 years Peter added constructing view from utility::vector
(edit) @762   16 years Jari Häkkinen Fixes #76. Creating/recreating BLAS support matrix only when needed.
(edit) @761   16 years Jari Häkkinen Fixes #7.
(edit) @760   16 years Peter throw exception when detecting invalid 2x2 table. Fixes #26
(edit) @759   16 years Jari Häkkinen Fixes #171 and addresses #2. A few more GSL_error exceptions. Removed …
(edit) @758   16 years Jari Häkkinen Fixes #2. Finalized adding GSL_error exceptions.
(edit) @757   16 years Jari Häkkinen Fixed #include statemenst and forward declarations. asserts in headers …
(edit) @756   16 years Jari Häkkinen Added missing #include
(edit) @755   16 years Jari Häkkinen Addresses #2 and #65. Continued adding GSL_error exceptions, and added …
(edit) @754   16 years Jari Häkkinen Addresses #2 and #65. Continued adding GSL_error exceptions, and added …
(edit) @753   16 years Jari Häkkinen Addresses #2. Continued adding GSL_error exceptions.
(edit) @752   16 years Jari Häkkinen Moving a function implementation from .h to .cc.
(edit) @751   16 years Jari Häkkinen Addresses #2. Continued adding GSL_error exceptions.
(edit) @750   16 years Jari Häkkinen Addresses #2. Continued adding GSL_error exceptions.
(edit) @749   16 years Peter fixes #72
(edit) @748   16 years Peter documentation for SNR improved. fixes #123
(edit) @747   16 years Peter replaced includes in header files with forward declarations when …
(edit) @746   16 years Peter Fixes #146
(edit) @745   16 years Peter fixes #154
(edit) @743   16 years Peter Changed function to return reference to member variable string. This …
(edit) @742   16 years Peter added test that LinearWeighte? is equal to PolynomialWeighted?(1) fixes #166
(edit) @741   16 years Peter fixes #161 and #164
(edit) @740   16 years Peter added more test in MultiDimWeighted? and moved some stuff to be …
(edit) @739   16 years Peter fixes #178 and removes a bug in MultiDimensional?
(edit) @738   16 years Jari Häkkinen Fixes #8 and #179, addresses #2.
(edit) @737   16 years Peter moving vector matrix multiplication to matrix.h and matrix.cc
(edit) @736   16 years Peter Fixes #176
(edit) @735   16 years Peter forgot to check in matrix.h
(edit) @734   16 years Peter added vector*matrix and matrix*vector operators. fixes #18
(edit) @733   16 years Peter fixes #53
(edit) @732   16 years Peter fixes #42
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