source: trunk/yat

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Diff Rev Age Author Log Message
(edit) @881   14 years Peter merged constIterator into Iterator and added an extra template …
(edit) @880   14 years Peter refs #244
(edit) @879   14 years Markus Ringnér Added support to utility::vector for gsl-functions that finds indices …
(edit) @878   14 years Markus Ringnér Problem with previous checkin fixed
(edit) @877   14 years Markus Ringnér This revision breaks the vector_test. I know this is against the rules …
(edit) @876   14 years Jari Häkkinen Added missing #include <cassert>
(edit) @875   14 years Peter rewriting SW algo, making code clearer, and perhaps removing a few bugs...?
(edit) @874   14 years Markus Ringnér Fixes ticket:237
(edit) @873   14 years Peter fixing some docs
(edit) @872   14 years Peter Some docs for TypeInfo?
(edit) @871   14 years Peter minor docs fix
(edit) @869   14 years Peter Adding Smith-Waterman local alignment and modified ssearch to use this …
(edit) @868   14 years Peter fixes ticket:236
(edit) @867   14 years Peter adding function doing a SSEARCH between two strings
(edit) @866   14 years Markus Ringnér refs #236. EnsembleBuilder::predict bug fixed for matrix-based …
(edit) @865   14 years Peter changing URL to http://trac.thep.lu.se/trac/yat
(edit) @863   14 years Markus Ringnér Fixed bug in FeatureSelectorIR that resulted in incorrect results!.
(edit) @862   14 years Markus Ringnér Fixed bug in InputRanker? that sometimes gave rise to a bus error …
(edit) @861   14 years Peter adding class to store and compare std::type_info
(edit) @860   14 years Peter fixes #149 - Target constructor from Target and vector<string>
(edit) @859   14 years Peter updated copyright
(edit) @858   14 years Peter refs #148 in EnsembleBuilder?
(edit) @857   14 years Peter refs #148 in NCC
(edit) @856   14 years Markus Ringnér The SNR score is now ok again and renamed SNRScore. Fixes #235"
(edit) @852   15 years Jari Häkkinen Fixes #228.
(edit) @851   15 years Jari Häkkinen Fixes #229.
(edit) @848   15 years Jari Häkkinen Merged log:/branches/0.3.1#838:846 to trunk.
(edit) @842   15 years Peter fixed typo in error msg
(edit) @837   15 years Peter Fixed include to be correct also when being case-sensitive. refs #220
(edit) @833   15 years Jari Häkkinen Addresses #217. Fixed so that 'make distcheck' compiles but tests fail …
(edit) @832   15 years Peter Refs #217 cleaning up makefile.am
(edit) @831   15 years Peter Refs #185.
(edit) @830   15 years Jari Häkkinen Fixes #206.
(edit) @829   15 years Jari Häkkinen Fixes #173.
(edit) @828   15 years Peter Generalized ConsenusInputRanker?, Fixes #151
(edit) @827   15 years Peter added Functors to be used in CIR. Refs #151
(edit) @826   15 years Peter documentation and some minor fixes Fixes #135
(edit) @825   15 years Peter removed minmax functions and moved shuffle into vector.*
(edit) @823   15 years Peter BootstrapSampler?. Fixes #134
(edit) @822   15 years Peter redesigned tTest fixes #212 and #156
(edit) @821   15 years Peter Modified ROC class to use AUC class in calculation of ROC area. Refs #101
(edit) @820   15 years Peter Changed name again. ROCScore is now called AUC. Also fixed several …
(edit) @818   15 years Peter It depends on the use case here, but I think I agree so hist_ is no …
(edit) @817   15 years Peter Fixes #143
(edit) @815   15 years Peter added constructor for DataLookup1D from a utility::vector
(edit) @813   15 years Peter Predict in NBC. Fixes #57
(edit) @812   15 years Peter implemented NBC predict. Have to check what happens in the weighted …
(edit) @811   15 years Peter dox
(edit) @810   15 years Jari Häkkinen Changed to obey the general wisdom: If you write the same code snipet …
(edit) @809   15 years Jari Häkkinen Fixed spelling.
(edit) @808   15 years Peter previous argument was invalid, but here is an implementation. Fixes #205
(edit) @805   15 years Peter removed Option and Commandline. Not mature enough for a release. …
(edit) @803   15 years Peter removed Microarray namespce and its conents
(edit) @798   15 years Jari Häkkinen Removed unnecessary #include. Added tests for random number distributions.
(edit) @797   15 years Jari Häkkinen Fixes #191. This is the best that can be done with the current design.
(edit) @796   15 years Jari Häkkinen Fixes #201.
(edit) @794   15 years Peter making yat compile
(edit) @792   15 years Jari Häkkinen Addresses #193. matrix now works as outlined in the ticket discussion. …
(edit) @791   15 years Jari Häkkinen Addresses #193. Added missing implementations.
(edit) @790   15 years Jari Häkkinen Addresses #193. Fixing doxygen docs, and operator=.
(edit) @789   15 years Jari Häkkinen Addresses #193. vector now works as outlined here. Added some …
(edit) @788   15 years Jari Häkkinen Improved comparison operator and equal function doxygen doc. Added for …
(edit) @787   15 years Peter removed v_const in vector since it never used for anything but only …
(edit) @785   15 years Peter I think it is clearer if gsl_vector_const_view is declared as const …
(edit) @784   15 years Jari Häkkinen References #155. Removed potential null pointer usage. Some unwanted …
(edit) @783   15 years Jari Häkkinen Fixes #155. Added asserts to check vectors in all non-const functions …
(edit) @782   15 years Jari Häkkinen Fixes #195.
(edit) @781   15 years Peter changing name to ROCScore and also added some cassert includes
(edit) @780   15 years Jari Häkkinen Fixed exception message.
(edit) @779   15 years Peter Refs #101
(edit) @778   15 years Peter added ROCscore class. refs #101
(edit) @777   15 years Peter Changed Fisher interface dramatically. No longer inherited from Score. …
(edit) @776   15 years Jari Häkkinen Fixed typos.
(edit) @775   15 years Jari Häkkinen Fixes #200.
(edit) @774   15 years Jari Häkkinen Fixes #194.
(edit) @773   15 years Jari Häkkinen Fixes #138. Removed add, sub, scale and added appropriate operators.
(edit) @772   15 years Peter fixes #126 and added some functions in AveragerPair? and …
(edit) @768   15 years Peter addresses #57
(edit) @767   15 years Peter Fixes #65
(edit) @766   15 years Peter added constructing view from utility::vector
(edit) @762   15 years Jari Häkkinen Fixes #76. Creating/recreating BLAS support matrix only when needed.
(edit) @761   15 years Jari Häkkinen Fixes #7.
(edit) @760   15 years Peter throw exception when detecting invalid 2x2 table. Fixes #26
(edit) @759   15 years Jari Häkkinen Fixes #171 and addresses #2. A few more GSL_error exceptions. Removed …
(edit) @758   15 years Jari Häkkinen Fixes #2. Finalized adding GSL_error exceptions.
(edit) @757   15 years Jari Häkkinen Fixed #include statemenst and forward declarations. asserts in headers …
(edit) @756   15 years Jari Häkkinen Added missing #include
(edit) @755   15 years Jari Häkkinen Addresses #2 and #65. Continued adding GSL_error exceptions, and added …
(edit) @754   15 years Jari Häkkinen Addresses #2 and #65. Continued adding GSL_error exceptions, and added …
(edit) @753   15 years Jari Häkkinen Addresses #2. Continued adding GSL_error exceptions.
(edit) @752   15 years Jari Häkkinen Moving a function implementation from .h to .cc.
(edit) @751   15 years Jari Häkkinen Addresses #2. Continued adding GSL_error exceptions.
(edit) @750   15 years Jari Häkkinen Addresses #2. Continued adding GSL_error exceptions.
(edit) @749   15 years Peter fixes #72
(edit) @748   15 years Peter documentation for SNR improved. fixes #123
(edit) @747   15 years Peter replaced includes in header files with forward declarations when …
(edit) @746   15 years Peter Fixes #146
(edit) @745   15 years Peter fixes #154
(edit) @743   15 years Peter Changed function to return reference to member variable string. This …
(edit) @742   15 years Peter added test that LinearWeighte? is equal to PolynomialWeighted?(1) fixes #166
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