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Diff Rev Age Author Log Message
(edit) @2391   12 years Peter updating copyright years
(edit) @2390   12 years Peter Preparing release branch
(edit) @2389   12 years Peter adding some missing since tags
(edit) @2388   12 years Peter add doxygen tag relates
(edit) @2387   12 years Peter avoid long lines
(edit) @2386   12 years Peter avoid referring to data file in a function that works on a stream
(edit) @2385   12 years Peter doc typo
(edit) @2384   12 years Peter updating copyright years
(edit) @2383   12 years Peter updated NEWS
(edit) @2382   12 years Peter merged patch release 0.6.3 into trunk.
(edit) @2377   12 years Peter docs typo
(edit) @2376   12 years Peter closes #496
(edit) @2375   12 years Peter improve docs for WeightedIterator? and DataWeightProxy? and add some …
(edit) @2374   12 years Peter changing value_type to const double (or const DataWeight?) in …
(edit) @2373   12 years Peter adding docs on type requirements in Container2DIterator. Adding some …
(edit) @2372   12 years Peter adding concept checks merge
(edit) @2371   12 years Peter adding concept checks in RowNormalizer? and ColumnNormalizer?
(edit) @2370   12 years Peter closes #646
(edit) @2369   12 years Peter fixes some issues in class Codon and extending tests
(edit) @2368   12 years Peter new class omic::Codon
(edit) @2367   12 years Peter deleted property svn:executable
(edit) @2366   12 years Peter New class GenomicPosition?
(edit) @2365   12 years Peter refs #623
(edit) @2364   12 years Peter closes ticket #623.
(edit) @2363   12 years Peter fixing some leftover errors. refs #640
(edit) @2362   12 years Peter more tests for SegmentMap?. closes #640
(edit) @2361   12 years Peter base class should always have virtual destructor (or non-virtual …
(edit) @2360   12 years Peter refs #640. adding a functor in SegmentTree? to tranlate a value_type to …
(edit) @2359   12 years Peter New functor Identity that returns passed argument
(edit) @2358   12 years Peter move most of SegmentSet? impl to a base class SegmentTree? and implement …
(edit) @2357   12 years Peter use compare(Segment, Segment) as comparator in SegmentSet? which allows …
(edit) @2356   12 years Peter adding more types required to conform to 'Unique Sorted Associated …
(edit) @2355   12 years Peter added some more types to SegmentSet?'s public interface
(edit) @2354   12 years Peter Before we generate other docs in other formats than html. Remove …
(edit) @2353   12 years Peter Turn on a limited preprocessor for doxygen. Fixes #644.
(edit) @2352   12 years Peter fixes #645. error message is now: invalid argument --bar'
(edit) @2351   12 years Peter remove private function not used anymore
(edit) @2350   12 years Peter I'm always calling 'make all' before 'make release' avoid that need by …
(edit) @2349   12 years Peter adding some tests for SegmentSet?
(edit) @2348   12 years Peter allow changing description after construction.
(edit) @2347   12 years Peter avoid double colon (: :) in unrecognized option error message
(edit) @2346   12 years Peter refs #496. re-writing YAT_LT_LINK_IFELSE based on suggestion from …
(edit) @2345   12 years Peter correcting dependency for yat_lt_link_ifelse_test. refs #496
(edit) @2344   12 years Peter doc typo
(edit) @2343   12 years Peter adding missing file. refs #377
(edit) @2342   12 years Peter adding missing files. refs #377
(edit) @2341   12 years Peter New namespace omic and new class omic::DNA. closes #377
(edit) @2340   12 years Peter closes #627
(edit) @2339   12 years Peter refs #627 extending NeighborWeighting? concept to require defaulf …
(edit) @2338   12 years Peter adding an archetype class for distance concept and use that class in …
(edit) @2337   12 years Peter missing includes
(edit) @2336   12 years Peter prefer lines shorter than 80 characters (again)
(edit) @2335   12 years Peter prefer lines shorter than 80 characters
(edit) @2334   12 years Peter fixes #625
(edit) @2333   12 years Peter fixes #556
(edit) @2332   12 years Peter update to latest autoconf-archive
(edit) @2331   12 years Peter adding missing since tag
(edit) @2330   12 years Peter tiny docs typo
(edit) @2329   12 years Peter untabify
(edit) @2328   12 years Peter install yat.pc during 'make install-exec rather than install-data
(edit) @2327   12 years Peter update to latest autoconf-archive
(edit) @2326   12 years Peter update boost m4 macro, which now uses …
(edit) @2325   12 years Peter prefer using std::swap and avoid long lines
(edit) @2324   12 years Peter new class KernelPCA. closes #639
(edit) @2323   12 years Peter removing some out-commented code and avoid using namespace ::utility …
(edit) @2321   12 years Peter adding missing include
(edit) @2316   12 years Peter remove includes not needed
(edit) @2313   12 years Peter minor doc typo
(edit) @2312   12 years Peter fixing more warnings from doxygen 1.7.1
(edit) @2311   12 years Peter porting r2310 to trunk. Fixing warnings from doxygen 1.7.1 so 'make …
(edit) @2309   12 years Peter create dummie doxygen.mk only if it doesnt exist
(edit) @2308   12 years Peter creating dummie doxygen.mk during configure. fixes #636
(edit) @2307   12 years Peter adding missing file in dist
(edit) @2306   12 years Peter update download url to sourceforge
(edit) @2305   12 years Peter new function: split(3)
(edit) @2303   12 years Peter missing include
(edit) @2302   12 years Peter using boost function in to_lower and to_upper to make them respect the …
(edit) @2301   12 years Peter allow hook in make release that is called after tarball (and md5 file) …
(edit) @2300   12 years Peter update BUG_REPORT
(edit) @2299   12 years Peter set border in html table. fixes #622
(edit) @2298   12 years Peter update AUTHORS
(edit) @2297   12 years Peter dvi, ps, and pdf docs are no longer supported
(edit) @2296   12 years Peter class SegmentSet?: added function clear and fixed bug in insert. …
(edit) @2295   12 years Peter fix typo in comment
(edit) @2294   12 years Peter refs #635. fix return type (int) in compare_3way and add some more …
(edit) @2293   12 years Peter adding a function that takes intersection of two Sections. refs #635
(edit) @2292   12 years Peter always use Compare functor in Segment (not std::less)
(edit) @2291   12 years Peter refs #635. New classes Segment and SegmentSet?.
(edit) @2290   12 years Peter fixing type. files belong to yat
(edit) @2289   12 years Peter adding test, refs #623
(edit) @2288   12 years Peter avoid confusing doxygen
(edit) @2287   12 years Peter hide private class in docs (fixes #628) and chnage docs to point to …
(edit) @2286   12 years Peter replace class PtrCompare? with two function make_ptr_compare that …
(edit) @2285   12 years Peter adding a class Dereferencer, a functor that returns *argument. refs #632
(edit) @2284   12 years Peter fix doc typo
(edit) @2283   12 years Peter fix Centralizer so it works with mixed iterators. Make it clear that …
(edit) @2282   12 years Peter document and test that DataIterator? and WeightIterator? works …
(edit) @2281   12 years Peter fixing some style, refs #633
(edit) @2280   12 years Peter adding comment on limitations of iterator_traits, refs #633
(edit) @2279   12 years Peter equality operator should be x = x (not x=x) in shell
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