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Diff Rev Age Author Log Message
(edit) @2838   10 years Peter merge release 0.9 into trunk
(edit) @2837   10 years Peter avoid ancient inclusion guards around '#include <config.h>'
(edit) @2828   10 years Peter fix identation
(edit) @2827   10 years Peter Remove -Itop_srcdir from CPPFLAGS. Automake already adds -Isrcdir to …
(edit) @2825   10 years Peter upgrade to autoconf macro archive 2012.09.08
(edit) @2824   10 years Peter remove intermediate libraries. Makefiles in corresponding …
(edit) @2823   10 years Peter bumping version to 0.10pre
(edit) @2821   10 years Peter preparing new stable branch 0.9
(edit) @2820   10 years Peter update copyright years
(edit) @2819   10 years Jari Häkkinen Migrating fix from ​http://dev.thep.lu.se/svndigest/changeset/1503. …
(edit) @2818   10 years Peter prefer 'if (b)' over 'if (a && b)' when 'b' is a subset of 'a'.
(edit) @2817   10 years Peter update copyright years
(edit) @2816   10 years Peter change name of function cigar => alignment
(edit) @2815   10 years Peter closes #706. Implement a generalization of SmithWaternan? and …
(edit) @2814   10 years Peter fixed docs typo
(edit) @2810   10 years Peter add missing files in r2809. refs #705
(edit) @2809   10 years Peter closes #705. Create a common interface class for average classes …
(edit) @2808   10 years Peter fixed grammar typo in docs
(edit) @2807   10 years Peter allow enable/disable silent-rules
(edit) @2806   10 years Peter avoid spurious error on OSX Tiger on which 'rm foo/.*' tries to remove …
(edit) @2805   10 years Peter avoid autoconf warnings in tests and do not delete testdir in test …
(edit) @2804   10 years Peter RNG::set_state: prefer throw on error.
(edit) @2803   10 years Peter fixed spurious test failures as well as a bug in operator+=. refs #705
(edit) @2802   10 years Peter adding documentation and tests. Remove private member count_ (not …
(edit) @2801   10 years Peter add new alias for gsl doc url
(edit) @2800   10 years Peter adding variables seed_ and count_ to make random numbers different in …
(edit) @2799   10 years Peter first version of class Averager4. refs #705
(edit) @2798   10 years Peter merge release 0.8.2 into trunk
(edit) @2793   10 years Peter mention r2792 in NEWS
(edit) @2792   10 years Peter introduced parameter mismatch in ssearch
(edit) @2790   10 years Peter remove useless forward declaration
(edit) @2789   10 years Peter adding a comment. refs #568
(edit) @2788   10 years Peter correct documentation
(edit) @2787   10 years Peter update coyright years
(edit) @2786   10 years Peter update README. mention boost libraries rather than specific Thread Library.
(edit) @2785   10 years Peter skip boost link tests if --without-boost was provided
(edit) @2784   10 years Jari Häkkinen Resolving precision issues on my macbook pro.
(edit) @2783   10 years Jari Häkkinen Addresses #714. Adding note on additional dependency on boost system.
(edit) @2782   10 years Jari Häkkinen Addresses #714. Added check for boost system libraries. Need to link …
(edit) @2781   10 years Peter fix spurious errors in long long test. First, remove -pthread before …
(edit) @2780   10 years Peter exclude -pthread from CPPFLAGS if compiler is warning about it. closes #713
(edit) @2779   10 years Peter record r2778 in NEWS, refs #712
(edit) @2778   10 years Peter mark SmartPtr? as internal and point to boost::shared_ptr
(edit) @2777   10 years Peter typo
(edit) @2776   10 years Peter avoid using '#' unless it marks a comment, and move serial to top of file
(edit) @2775   10 years Peter Fix typos 'Makfile'. Remove 'cd' as we now have a single non-recursive …
(edit) @2774   10 years Peter report long long test
(edit) @2773   10 years Peter declare HEADERs with srcdir so doxygen understands where to find them …
(edit) @2772   10 years Peter do not ignore BOOST_CPPFLAGS set in AX_BOOST_THREAD
(edit) @2770   10 years Peter change back to RNG being a singleton, which now stores gsl_rng* in a …
(edit) @2769   10 years Peter refs #568. test using multithreaded RNG
(edit) @2768   10 years Peter First version of redesigned RNG that provides one instance per thread …
(edit) @2767   10 years Peter look for boost thread library. refs #568
(edit) @2766   10 years Peter improve docs. closes #494
(edit) @2763   10 years Peter avoid race with static variable
(edit) @2762   10 years Peter set dependency for doxygen_test.sh
(edit) @2761   10 years Peter refs #494. fix approx p-value with ties
(edit) @2760   10 years Peter allow copy and assignment. refs #494
(edit) @2759   10 years Peter add test for exact p-value with ties. refs #494
(edit) @2758   10 years Peter test for approx p-value with ties refs #494
(edit) @2757   10 years Peter change definition of tau in presence of ties. refs #494
(edit) @2754   10 years Peter avoid suggesting bug reports to trac, prefer single quote (rather than …
(edit) @2753   10 years Peter remove trailing WS
(edit) @2752   10 years Peter improve English
(edit) @2751   10 years Peter minor correction
(edit) @2750   10 years Peter reintroduce target doc
(edit) @2749   10 years Peter add small convenience Makefiles in subdirs. closes #703
(edit) @2748   10 years Peter avoid extra if statement
(edit) @2747   10 years Peter doc typo
(edit) @2746   10 years Peter reflect non-recursive Makefile
(edit) @2745   10 years Peter remove doxygen.am no longer needed
(edit) @2744   10 years Peter conform rules make rules for yat-hello.1.0.tar.gz, yat-config and …
(edit) @2743   10 years Peter correct doc typo
(edit) @2742   10 years Peter minor speedup in DNA::complement
(edit) @2741   10 years Peter prefer vector and string as internals in omic::DNA
(edit) @2740   10 years Peter refs #703. remove cleanup code in Makefile.am (only needed in configure)
(edit) @2739   10 years Peter refs #703 using a non-recursive Makefile. Old Makefile.am are kept but …
(edit) @2738   10 years Peter SmithWaterman? improve docs
(edit) @2737   10 years Peter mention version of Automake with bug
(edit) @2736   10 years Peter fixes #702
(edit) @2735   10 years Peter fix matrix test and add new function trace
(edit) @2734   10 years Peter remove prefix #!
(edit) @2733   10 years Peter prefix Id tag with #! in order to try Trac excude that line
(edit) @2732   10 years Peter fix comment typo
(edit) @2731   10 years Peter avoid obscure code example
(edit) @2730   10 years Peter docs: clarification and code example for Dereferencer
(edit) @2729   10 years Peter Define version on one line in order to avoid that version change in …
(edit) @2728   10 years Peter typo
(edit) @2727   10 years Peter bump serial number to reflect r2726
(edit) @2726   10 years Peter avoid hard-coding configure; use $as_me
(edit) @2725   10 years Peter prefer 'AS_ECHO' over 'echo'
(edit) @2724   10 years Peter set svncopyright:ignore property
(edit) @2723   10 years Peter avoid < with string::npos
(edit) @2722   10 years Peter fix implementation of ROC::remove. refs #211
(edit) @2721   10 years Peter add a remove function in KolmogorovSmirnov?
(edit) @2720   10 years Peter ROC: remove a data value. closes #688
(edit) @2719   10 years Peter improve branching
(edit) @2718   10 years Peter implement ROC p-value handling weights and ties. closes #211
(edit) @2717   10 years Peter remove trailing WS
(edit) @2716   10 years Peter fixed docs so doxygen can parse
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