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Diff Rev Age Author Log Message
(edit) @3317   8 years Peter refs #806 add test for Pileup class
(edit) @3316   8 years Peter remove trailing ws
(edit) @3315   8 years Peter added inclusion of boost iterator_facade header. refs #803.
(edit) @3314   8 years Peter new test class: weighted_iterator_archetype. refs #803
(edit) @3313   8 years Peter Correct syntax so it works in VPATH build. Correct yat-hello source so …
(edit) @3312   8 years Peter correct lazycheck deps
(edit) @3311   8 years Peter append EXTRA_DIST with some m4 files that were missing in dist (only …
(edit) @3310   8 years Peter a first version of new class Pileup. refs #806
(edit) @3309   8 years Peter fixes #811
(edit) @3308   8 years Peter fixed two more glitches in the new version of 'make …
(edit) @3306   8 years Peter merge ptach release 0.12.1 into trunk
(edit) @3299   8 years Peter fix some glitches in make release-tag-upload rule (found while …
(edit) @3298   8 years Peter Yates' correction in Fisher's exact test. fixes #807.
(edit) @3297   8 years Peter fix mess up caused in latest merge (r3295).
(edit) @3295   8 years Peter merge release 0.12 into trunk
(edit) @3290   8 years Peter refs #803. Correct docs and reflect that random access iterators are …
(edit) @3289   8 years Peter refs #803. use boost concepts in Spearman.
(edit) @3288   8 years Peter add doxygen since tag
(edit) @3287   8 years Peter new function sum_weight
(edit) @3286   8 years Peter fixed docs typo
(edit) @3285   8 years Peter refs #803. Use boost concepts in sort_index. Make requirements more …
(edit) @3283   8 years Peter remove trailing WS
(edit) @3282   8 years Peter avoid extra tabs
(edit) @3281   8 years Peter Using boost concepts to define requirments in Centralizer. …
(edit) @3280   8 years Peter avoid tabs on otherwise empty lines
(edit) @3279   8 years Peter use boost_concepts requirements in random namespace. refs #803
(edit) @3278   8 years Peter use boost concept requirements in random namespace. refs #803
(edit) @3277   8 years Peter add some aliases to boost iterator concepts, for convenience
(edit) @3276   8 years Peter ref #803. revert part of r3273 for the same reason as explained in r3275
(edit) @3274   8 years Peter refs #803. record r3273 in NEWS
(edit) @3273   8 years Peter refs #803. Extend iterator tests using boost concepts. For …
(edit) @3270   8 years Peter When a project has a files that depends on the svn revsion such as …
(edit) @3269   8 years Peter fix some issues in YAT_SVN_RELEASE
(edit) @3268   8 years Peter fix that check-svn-diff exit 1 on success.
(edit) @3267   8 years Peter fix broken make rule 'check-svn-diff'; regressed in r3246
(edit) @3266   8 years Peter fixes #802
(edit) @3259   8 years Peter deprecated class Range. closes #786
(edit) @3258   8 years Peter correct docs of YAT_DEV_BUILD
(edit) @3257   8 years Peter added missing deprecated attribute
(edit) @3256   8 years Peter prefix DEV_BUILD with YAT_ (or uppercase(PACKAGE_) in general case, so …
(edit) @3255   8 years Peter removed repeat typedef
(edit) @3254   8 years Peter fixes #799
(edit) @3253   8 years Peter refs #799. get_error: don't use operator<< on Key just to create an …
(edit) @3252   8 years Peter avoid split in Codon
(edit) @3251   8 years Peter remove WS
(edit) @3250   8 years Peter remove gen_announce.sh.in since creation of announcement is now coded …
(edit) @3249   8 years Peter mention Deleter in SmartPtr? doc
(edit) @3248   8 years Peter update RP instructions to reflect that sf_user is no longer hard-coded
(edit) @3247   8 years Peter docs: fixed typo in example code
(edit) @3246   8 years Peter move some more targets from Makefile.am to macro YAT_SVN_RELEASE. Make …
(edit) @3245   8 years Peter avoid sorting entire range; instead let Percentiler be clever
(edit) @3244   8 years Peter prefer range constructor
(edit) @3243   8 years Peter speed up Percentiler when input range is unweighted and unsorted. Do …
(edit) @3242   8 years Peter docs typo (and English)
(edit) @3241   8 years Peter prefer range constructor over assigning with std::copy. remove dead code
(edit) @3240   8 years Peter remove WS
(edit) @3239   8 years Peter prefer range constructor over copy range with std::copy
(edit) @3238   8 years Peter sort_index: add some compile tests, CONCEPT_ASSERTs, and add docs on …
(edit) @3237   8 years Peter re-write sort_index so it's not limited to ranges of double but work …
(edit) @3236   8 years Peter BH correction on unsorted range. closes #796
(edit) @3232   8 years Peter tidy up indentation, and minor code change
(edit) @3231   8 years Peter tweak for clarity
(edit) @3230   8 years Peter typo
(edit) @3229   8 years Peter translate variables when PACKAGE is not suitable as shell variable or …
(edit) @3228   8 years Peter test for YAT_HEADER_ASSERT
(edit) @3227   8 years Peter improve 'required' field. The tests use aclocal via the bootstrap …
(edit) @3226   8 years Peter New macro YAT_HEADER_ASSERT
(edit) @3225   8 years Peter make code more readable
(edit) @3224   8 years Peter improve documentation; remove trailing WS
(edit) @3223   8 years Peter add pointer to boost::lockfree
(edit) @3220   8 years Peter bump version to 0.13pre
(edit) @3219   8 years Peter fix typo
(edit) @3217   8 years Peter update copyright years
(edit) @3216   8 years Peter fix svn targets so they work also in VPATH (alias doesn't work …
(edit) @3215   8 years Peter Prepare 0.12-stable branch
(edit) @3214   8 years Peter fixes #789. Change behavious of configure so that if INTERNAL_CXXFLAGS …
(edit) @3213   8 years Peter three new cigar functions
(edit) @3212   8 years Peter move Cigar defines to a separate file
(edit) @3211   8 years Peter improve docs of CIGAR
(edit) @3210   8 years Peter update copyright years
(edit) @3209   8 years Peter add missing source file and fix compilation error --without-samtools
(edit) @3208   8 years Peter record r3207 in NEWS
(edit) @3207   8 years Peter make constructor utility::Aligner(double, double) explicit
(edit) @3206   8 years Peter mention new class SmithWaterman? in Aligner::smith_waterman
(edit) @3205   8 years Peter implement new class SmithWaterman?
(edit) @3204   8 years Peter interface of new convenience class SmithWaterman? that uses the Aligner …
(edit) @3203   8 years Peter improve docs of CIGAR. closes #785
(edit) @3202   8 years Peter make Cigar work also without bam.h, refs #785. #define YAT_CIGAR_ etc …
(edit) @3201   8 years Peter add #define YAT_HAVE_LIBBAM to API and replace HAVE_LIBBAM accordingly.
(edit) @3200   8 years Peter implement first version of CIGAR (refs #785). Note, this revision does …
(edit) @3199   8 years Peter fixes #790
(edit) @3198   8 years Peter refs #790. Prefer checking (in configure) whether boost work rather …
(edit) @3197   8 years Peter refs #790. workaround for old boost
(edit) @3196   8 years Peter avoid test code that won't compile with old boost.
(edit) @3195   8 years Peter add first thin documentation for Aligner::Cigar. refs #785
(edit) @3194   8 years Peter add missing file. see r3173
(edit) @3193   8 years Peter document limitation due to bug in boost 1.48 (or older)
(edit) @3192   8 years Peter docs: fix spelling and remove broken link.
(edit) @3191   8 years Peter avoid compiler error (with gcc 4.4.6).
(edit) @3190   8 years Peter new class KernelMatrix?. closes #381
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