|
|
|
@4117
|
2 years |
Peter |
add assert
|
|
|
|
@4116
|
2 years |
Peter |
correct typo
|
|
|
|
@4115
|
2 years |
Peter |
always include config.h in source files
|
|
|
|
@4114
|
2 years |
Peter |
new class for one-way ANOVA test
|
|
|
|
@4113
|
2 years |
Peter |
fix docs typo
|
|
|
|
@4110
|
2 years |
Peter |
merge release 0.19 into trunk
|
|
|
|
@4106
|
2 years |
Peter |
docs: c++11 is required
|
|
|
|
@4105
|
2 years |
Peter |
implement +=, -=, and *= operators for DiagonalMatrix?; prefer using …
|
|
|
|
@4104
|
2 years |
Peter |
make doxygen happy
|
|
|
|
@4102
|
2 years |
Peter |
add wrapper function that calls std::string::contains, ::starts_with, …
|
|
|
|
@4101
|
2 years |
Peter |
AX_CXX_COMPILE_STDCXX_11 is just a one-line call to …
|
|
|
|
@4099
|
2 years |
Peter |
avoid setting svn:keywords on 3rd-party files
|
|
|
|
@4098
|
2 years |
Peter |
minor docs change
|
|
|
|
@4097
|
2 years |
Peter |
use boost when functionality is available; prefer passing const& …
|
|
|
|
@4096
|
2 years |
Peter |
simplify code and alter private interface to reflect what's going on inside
|
|
|
|
@4095
|
2 years |
Peter |
docs
|
|
|
|
@4094
|
2 years |
Peter |
handle spaces in argument to --htmldir
|
|
|
|
@4091
|
2 years |
Peter |
bumping version to 0.20pre
|
|
|
|
@4089
|
2 years |
Peter |
updating copyright years
|
|
|
|
@4088
|
2 years |
Peter |
Prepare 0.19-stable branch
|
|
|
|
@4087
|
2 years |
Peter |
extend docs; closes #710
|
|
|
|
@4086
|
2 years |
Peter |
handle header and source files in their own 'Makefile.am' in line with …
|
|
|
|
@4085
|
2 years |
Peter |
fix include so it works in a vpath build
|
|
|
|
@4083
|
2 years |
Peter |
merge kendall-score branch into trunk. refs #710
|
|
|
|
@4078
|
2 years |
Peter |
remove trailing ws
|
|
|
|
@4076
|
2 years |
Peter |
fixed docs typo
|
|
|
|
@4063
|
2 years |
Peter |
avoid warning with autoconf 2.71
|
|
|
|
@4062
|
2 years |
Peter |
merged r4061 into trunk
|
|
|
|
@4060
|
2 years |
Peter |
prefer throw_with_nested, when info in the caught expression makes …
|
|
|
|
@4059
|
2 years |
Peter |
new function: round, which is rounding elements in a range with the …
|
|
|
|
@4058
|
2 years |
Peter |
a not-so-random number generator that can be used to fill containers …
|
|
|
|
@4057
|
2 years |
Peter |
closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
|
|
|
|
@4056
|
2 years |
Peter |
docs: fix typo and add clarification
|
|
|
|
@4055
|
3 years |
Peter |
remove unneeded includes
|
|
|
|
@4054
|
3 years |
Peter |
mention modified interface in previous commit
|
|
|
|
@4053
|
3 years |
Peter |
add some test for correlation(Matrix); speed up, particuarly when …
|
|
|
|
@4052
|
3 years |
Peter |
add description on what is optimised during the training.
|
|
|
|
@4051
|
3 years |
Peter |
make Target::classifier() const; closes #972
|
|
|
|
@4050
|
3 years |
Peter |
remove white-space
|
|
|
|
@4049
|
3 years |
Peter |
do not allow implicit conversion
|
|
|
|
@4048
|
3 years |
Peter |
add parameter allowing scaling to other than unity variance.
|
|
|
|
@4047
|
3 years |
Peter |
corrected includes
|
|
|
|
@4046
|
3 years |
Peter |
docs typo
|
|
|
|
@4045
|
3 years |
Peter |
add missing file
|
|
|
|
@4044
|
3 years |
Peter |
new function multiprocess; closes #958
|
|
|
|
@4043
|
3 years |
Peter |
Add capacity to Queue and PriorityQueue?, which is a feature to limit …
|
|
|
|
@4042
|
3 years |
Peter |
upgrade to autoconf-archive-2021.02.19
|
|
|
|
@4041
|
3 years |
Peter |
avoid constructing temporary substring just for comparison
|
|
|
|
@4040
|
3 years |
Peter |
speed-up; prefer move instead of copy
|
|
|
|
@4039
|
3 years |
Peter |
Using me::value_type propagated to compilation errors and created …
|
|
|
|
@4036
|
3 years |
Peter |
closes #963. New class PercentileConfidenceInterval?
|
|
|
|
@4035
|
3 years |
Peter |
skeleton for PercentileConfidenceInterval?; refs #963
|
|
|
|
@4034
|
3 years |
Peter |
Decouple variables for extra programs and test programs, to allow …
|
|
|
|
@4032
|
3 years |
Peter |
merge release 0.18.1 into trunk
|
|
|
|
@4027
|
3 years |
Peter |
refs #968; fix implementation of SegmentSet::insert_merge and add some …
|
|
|
|
@4026
|
3 years |
Peter |
add rvalue insert to SegmentSet?; closes #968.
|
|
|
|
@4025
|
3 years |
Peter |
add move constructor for BamPair?
|
|
|
|
@4024
|
3 years |
Peter |
refs #968; SegmentTree::insert taking rvalue
|
|
|
|
@4023
|
3 years |
Peter |
refs #968; Segment constrctor taking rvalues
|
|
|
|
@4022
|
3 years |
Peter |
prefer std::shared_ptr over boost
|
|
|
|
@4021
|
3 years |
Peter |
closes #961. Improve message in thrown exceptions.
|
|
|
|
@4019
|
3 years |
Peter |
merge 0.18 into trunk
|
|
|
|
@4011
|
3 years |
Peter |
Use std smart pointers instead of boost. Prefer initialisation of …
|
|
|
|
@4010
|
3 years |
Peter |
Implement move constructo and move-assignment operator for …
|
|
|
|
@4009
|
3 years |
Peter |
closes #965; Default constructor for DiscreteGeneral?
|
|
|
|
@4005
|
3 years |
Peter |
int8_t needs <cstdint> when sam.h isn't included
|
|
|
|
@4004
|
3 years |
Peter |
add \since tag for new exception class invalid_argument
|
|
|
|
@4003
|
3 years |
Peter |
Add a constructor Aligner::Cigar(string) (closes #962)
Add a function …
|
|
|
|
@4001
|
3 years |
Peter |
Bumping version to 0.19pre
|
|
|
|
@3999
|
3 years |
Peter |
update copyright years
|
|
|
|
@3998
|
3 years |
Peter |
Prepare 0.18-stable branch
|
|
|
|
@3997
|
3 years |
Peter |
merge 0.17-stable branch into trunk
|
|
|
|
@3996
|
3 years |
Peter |
prefer std smart pointers
|
|
|
|
@3995
|
3 years |
Peter |
avoid using macros marked obsolete and instead use versions in LT_ …
|
|
|
|
@3994
|
3 years |
Peter |
simplify code
|
|
|
|
@3993
|
3 years |
Peter |
simplify code
|
|
|
|
@3992
|
3 years |
Peter |
recommend std rather than boost
|
|
|
|
@3991
|
3 years |
Peter |
new constructor in GenomicPosition?
|
|
|
|
@3990
|
3 years |
Peter |
prefer name with 'htslib' (instead of 'samtools')
|
|
|
|
@3987
|
3 years |
Peter |
merge release 0.17.2 into trunk
|
|
|
|
@3983
|
3 years |
Peter |
remove some text not relevant anymore, when we assume c++11 and htslib
|
|
|
|
@3982
|
3 years |
Peter |
improve docs
|
|
|
|
@3980
|
3 years |
Peter |
fixes #957. NegativeBinomial? now inherits from Multivariate
|
|
|
|
@3977
|
3 years |
Peter |
avoid accessing passed matrix (Ain) after it has been moved.
|
|
|
|
@3970
|
3 years |
Peter |
explain what position is when inside an insertion
|
|
|
|
@3969
|
3 years |
Peter |
docs typo
|
|
|
|
@3968
|
3 years |
Peter |
merge r3967 into trunk
|
|
|
|
@3966
|
3 years |
Peter |
merge changes in 0.17-stable branch (since 0.17.1) into trunk.
|
|
|
|
@3964
|
3 years |
Peter |
avoid warning with doxygen 1.8.19
|
|
|
|
@3963
|
3 years |
Peter |
new function supposed to be used by GSL error handler, resulting in a …
|
|
|
|
@3962
|
3 years |
Peter |
a4wide used to be the default value for PAPER_TYPE. but with modern …
|
|
|
|
@3961
|
3 years |
Peter |
fixes #845. Replace default GSL error handler in tests with one that …
|
|
|
|
@3960
|
3 years |
Peter |
closes #953. Since we are no longer using libboost_thread (or …
|
|
|
|
@3959
|
3 years |
Peter |
use std::mutex and friends instead of boost variants. refs #953
|
|
|
|
@3958
|
3 years |
Peter |
change to using std distributions instead of boost. Some distributions …
|
|
|
|
@3957
|
3 years |
Peter |
closes #890. Implement normalizer::UnityScaler?.
|
|
|
|
@3956
|
3 years |
Peter |
simplify code
|
|
|
|
@3955
|
3 years |
Peter |
use std::move and friend rather than internal macro (since we can …
|
|
|
|
@3954
|
3 years |
Peter |
bind2nd is deprecated in C++11 (and removed in c++17). Replace with …
|
|
|
|
@3953
|
3 years |
Peter |
refs #890. Implement RangeNormalizer?, a generalization of Centralizer …
|
|
|
|
