

@4117

2 years 
Peter 
add assert



@4116

2 years 
Peter 
correct typo



@4115

2 years 
Peter 
always include config.h in source files



@4114

2 years 
Peter 
new class for oneway ANOVA test



@4113

2 years 
Peter 
fix docs typo



@4110

2 years 
Peter 
merge release 0.19 into trunk



@4106

2 years 
Peter 
docs: c++11 is required



@4105

2 years 
Peter 
implement +=, =, and *= operators for DiagonalMatrix?; prefer using …



@4104

2 years 
Peter 
make doxygen happy



@4102

2 years 
Peter 
add wrapper function that calls std::string::contains, ::starts_with, …



@4101

2 years 
Peter 
AX_CXX_COMPILE_STDCXX_11 is just a oneline call to …



@4099

2 years 
Peter 
avoid setting svn:keywords on 3rdparty files



@4098

2 years 
Peter 
minor docs change



@4097

2 years 
Peter 
use boost when functionality is available; prefer passing const& …



@4096

2 years 
Peter 
simplify code and alter private interface to reflect what's going on inside



@4095

2 years 
Peter 
docs



@4094

2 years 
Peter 
handle spaces in argument to htmldir



@4091

2 years 
Peter 
bumping version to 0.20pre



@4089

2 years 
Peter 
updating copyright years



@4088

2 years 
Peter 
Prepare 0.19stable branch



@4087

2 years 
Peter 
extend docs; closes #710



@4086

2 years 
Peter 
handle header and source files in their own 'Makefile.am' in line with …



@4085

2 years 
Peter 
fix include so it works in a vpath build



@4083

2 years 
Peter 
merge kendallscore branch into trunk. refs #710



@4078

2 years 
Peter 
remove trailing ws



@4076

2 years 
Peter 
fixed docs typo



@4063

2 years 
Peter 
avoid warning with autoconf 2.71



@4062

2 years 
Peter 
merged r4061 into trunk



@4060

2 years 
Peter 
prefer throw_with_nested, when info in the caught expression makes …



@4059

2 years 
Peter 
new function: round, which is rounding elements in a range with the …



@4058

2 years 
Peter 
a notsorandom number generator that can be used to fill containers …



@4057

2 years 
Peter 
closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.



@4056

2 years 
Peter 
docs: fix typo and add clarification



@4055

3 years 
Peter 
remove unneeded includes



@4054

3 years 
Peter 
mention modified interface in previous commit



@4053

3 years 
Peter 
add some test for correlation(Matrix); speed up, particuarly when …



@4052

3 years 
Peter 
add description on what is optimised during the training.



@4051

3 years 
Peter 
make Target::classifier() const; closes #972



@4050

3 years 
Peter 
remove whitespace



@4049

3 years 
Peter 
do not allow implicit conversion



@4048

3 years 
Peter 
add parameter allowing scaling to other than unity variance.



@4047

3 years 
Peter 
corrected includes



@4046

3 years 
Peter 
docs typo



@4045

3 years 
Peter 
add missing file



@4044

3 years 
Peter 
new function multiprocess; closes #958



@4043

3 years 
Peter 
Add capacity to Queue and PriorityQueue?, which is a feature to limit …



@4042

3 years 
Peter 
upgrade to autoconfarchive2021.02.19



@4041

3 years 
Peter 
avoid constructing temporary substring just for comparison



@4040

3 years 
Peter 
speedup; prefer move instead of copy



@4039

3 years 
Peter 
Using me::value_type propagated to compilation errors and created …



@4036

3 years 
Peter 
closes #963. New class PercentileConfidenceInterval?



@4035

3 years 
Peter 
skeleton for PercentileConfidenceInterval?; refs #963



@4034

3 years 
Peter 
Decouple variables for extra programs and test programs, to allow …



@4032

3 years 
Peter 
merge release 0.18.1 into trunk



@4027

3 years 
Peter 
refs #968; fix implementation of SegmentSet::insert_merge and add some …



@4026

3 years 
Peter 
add rvalue insert to SegmentSet?; closes #968.



@4025

3 years 
Peter 
add move constructor for BamPair?



@4024

3 years 
Peter 
refs #968; SegmentTree::insert taking rvalue



@4023

3 years 
Peter 
refs #968; Segment constrctor taking rvalues



@4022

3 years 
Peter 
prefer std::shared_ptr over boost



@4021

3 years 
Peter 
closes #961. Improve message in thrown exceptions.



@4019

3 years 
Peter 
merge 0.18 into trunk



@4011

3 years 
Peter 
Use std smart pointers instead of boost. Prefer initialisation of …



@4010

3 years 
Peter 
Implement move constructo and moveassignment operator for …



@4009

3 years 
Peter 
closes #965; Default constructor for DiscreteGeneral?



@4005

3 years 
Peter 
int8_t needs <cstdint> when sam.h isn't included



@4004

3 years 
Peter 
add \since tag for new exception class invalid_argument



@4003

3 years 
Peter 
Add a constructor Aligner::Cigar(string) (closes #962)
Add a function …



@4001

3 years 
Peter 
Bumping version to 0.19pre



@3999

3 years 
Peter 
update copyright years



@3998

3 years 
Peter 
Prepare 0.18stable branch



@3997

3 years 
Peter 
merge 0.17stable branch into trunk



@3996

3 years 
Peter 
prefer std smart pointers



@3995

3 years 
Peter 
avoid using macros marked obsolete and instead use versions in LT_ …



@3994

3 years 
Peter 
simplify code



@3993

3 years 
Peter 
simplify code



@3992

3 years 
Peter 
recommend std rather than boost



@3991

3 years 
Peter 
new constructor in GenomicPosition?



@3990

3 years 
Peter 
prefer name with 'htslib' (instead of 'samtools')



@3987

3 years 
Peter 
merge release 0.17.2 into trunk



@3983

3 years 
Peter 
remove some text not relevant anymore, when we assume c++11 and htslib



@3982

3 years 
Peter 
improve docs



@3980

3 years 
Peter 
fixes #957. NegativeBinomial? now inherits from Multivariate



@3977

3 years 
Peter 
avoid accessing passed matrix (Ain) after it has been moved.



@3970

3 years 
Peter 
explain what position is when inside an insertion



@3969

3 years 
Peter 
docs typo



@3968

3 years 
Peter 
merge r3967 into trunk



@3966

3 years 
Peter 
merge changes in 0.17stable branch (since 0.17.1) into trunk.



@3964

3 years 
Peter 
avoid warning with doxygen 1.8.19



@3963

3 years 
Peter 
new function supposed to be used by GSL error handler, resulting in a …



@3962

3 years 
Peter 
a4wide used to be the default value for PAPER_TYPE. but with modern …



@3961

3 years 
Peter 
fixes #845. Replace default GSL error handler in tests with one that …



@3960

3 years 
Peter 
closes #953. Since we are no longer using libboost_thread (or …



@3959

3 years 
Peter 
use std::mutex and friends instead of boost variants. refs #953



@3958

3 years 
Peter 
change to using std distributions instead of boost. Some distributions …



@3957

3 years 
Peter 
closes #890. Implement normalizer::UnityScaler?.



@3956

3 years 
Peter 
simplify code



@3955

3 years 
Peter 
use std::move and friend rather than internal macro (since we can …



@3954

3 years 
Peter 
bind2nd is deprecated in C++11 (and removed in c++17). Replace with …



@3953

3 years 
Peter 
refs #890. Implement RangeNormalizer?, a generalization of Centralizer …


