

@586

17 years 
Peter 
closes #23 redesign of regression classes



@585

17 years 
Markus Ringnér 
Removed forgotten debug printout



@584

17 years 
Markus Ringnér 
Fixed so NCC and IGP works when there are NaNs? in centroids.



@583

17 years 
Markus Ringnér 
Forgot this one in last check in



@582

17 years 
Markus Ringnér 
Modified addding arrays to Averagers so templates are used to allow …



@581

17 years 
Markus Ringnér 
Added class for ingroupproportions score. Removed gslapi::vector …



@580

17 years 
Jari Häkkinen 
Removed LOCAL_INCLUDES.



@579

17 years 
Jari Häkkinen 
Removed obsolete lines.



@578

17 years 
Jari Häkkinen 
Removed stray file.



@577

17 years 
Jari Häkkinen 
More lib changed to c++_tools stuff.



@576

17 years 
Jari Häkkinen 
lib changed to c++_tools



@575

17 years 
Jari Häkkinen 
Renaming lib to c++_tools.



@574

17 years 
Jari Häkkinen 
Removing symbolic link.



@573

17 years 
Jari Häkkinen 
Made documentation generation optional, issue 'make doc' for docs …



@572

17 years 
Jari Häkkinen 
Removed optional creation of doc. Changed package name.



@571

17 years 
Peter 
added function to set CParameter in SVM



@570

17 years 
Jari Häkkinen 
Added copyright statement to files.



@569

17 years 
Peter 
modified prediction from SVM



@568

17 years 
Peter 
minor change in SVM



@567

17 years 
Markus Ringnér 
Fixed error message when ,atrix contains elements not covertible to …



@566

17 years 
Peter 
fixed bug in selected function in Kernels



@565

17 years 
Peter 
removed default row/column in constructors (MatrixLookup? and DataLookup1D)



@564

17 years 
Peter 
weight MatrixLookup? from a KernelLookup?



@563

17 years 
Jari Häkkinen 
Added copyright statement.



@562

17 years 
Jari Häkkinen 
Corrected copyright statement.



@561

17 years 
Jari Häkkinen 
Fixed documentation, added copyright statement.



@560

17 years 
Markus Ringnér 
Minor fixes plus fixed bug in ConsensusInputRanker?



@559

17 years 
Peter 
some changes in EB



@558

17 years 
Peter 
ConsensusInputRanker? now supports weights



@557

17 years 
Peter 
fixed bug in Averager::variance



@556

17 years 
Peter 
correcting assignment operators



@555

17 years 
Peter 
inserted private operator=



@554

17 years 
Markus Ringnér 
added small test



@553

17 years 
Peter 
added range check in KernelLookup? Constructor and clarified doc in …



@552

17 years 
Peter 
killed bug in SVM



@551

17 years 
Markus Ringnér 
Added tests of two nested CrossSplitters? to crossvalidation_test



@550

17 years 
Peter 
removed assert from matrix.h



@549

17 years 
Peter 
forgot to add file



@548

17 years 
Peter 
fixed bug in Kernels



@547

17 years 
Peter 
deleting dynamically allocated kernels in SVM destructor



@546

17 years 
Peter 
inlined function



@545

17 years 
Peter 
added feature selection for SVM



@544

17 years 
Peter 
corrected SVM::make_classifier



@543

17 years 
Peter 
moved destruction of ranker to SupervisedClassifier?



@542

17 years 
Peter 
added predict function in SVM supporting weight



@541

17 years 
Peter 
weights supported in CrossSplitter?



@540

17 years 
Peter 
added weights in CrossSplitter?  not supported in interface though.



@539

17 years 
Peter 
reintroduced prediction in SVM



@538

17 years 
Peter 
corrected test for KernelLookup?



@537

17 years 
Peter 
forked tests and fixed bugs



@536

17 years 
Peter 
fixed problem with ConsensusInputranker?  Now all tests do pass



@535

17 years 
Peter 
changed minor stupid stuff in gslapi



@534

17 years 
Peter 
bug fixes in MatrixLookup? and extended test



@533

17 years 
Peter 
test for MatrixLookup?. NOTE: consensus_inputranker_test still fails



@532

17 years 
Peter 
modified implementation of Parson weighted  now in line with other …



@531

17 years 
Markus Ringnér 
Note there are some problem when creating MatrixLookups? from …



@530

17 years 
Markus Ringnér 
Fixed problems for empty target groups



@529

17 years 
Markus Ringnér 
Added score for signaltonoise ratio (Golub score). Fixed …



@528

17 years 
Peter 
adding source files that were forgotten



@527

17 years 
Peter 
Modified Kernel to be built from MatrixLookup? rather than …



@526

17 years 
Markus Ringnér 
Fixed bug in tScore and in MatrixLookup?. Added support for scoring …



@525

17 years 
Markus Ringnér 
Added structure to Supervised classifier and NCC to support ranking …



@524

17 years 
Peter 
fixed bug PolynimialKernelFunction?  can now handle NaNs? with weights



@523

17 years 
Peter 
add prediction functions to SVM



@522

17 years 
Peter 
added function to add InputRanker? to ConsensusInputRanker?



@521

17 years 
Peter 
extended target and ensemble tests



@520

17 years 
Peter 
changed internal representation in Target



@519

17 years 
Peter 
percentile is now called percentile



@518

17 years 
Peter 
also adding the test for EnsembleBuilder?



@517

17 years 
Peter 
fixed bug in DataLookup2D and created test for EnsembleBuilder?



@516

17 years 
Peter 
added function generating weight matrix with respect to notanumber …



@515

17 years 
Peter 
fixed indentation for doxygen



@514

17 years 
Peter 
generalised binary functionality in Target



@513

17 years 
Peter 
added kernels using weights



@512

17 years 
Peter 
moved common member variables to base class Kernel



@511

17 years 
Peter 
added percentile function for gslapi::vector



@510

17 years 
Peter 
fixed nan return in AveragerPair::ccc()



@509

17 years 
Peter 
added test for target
redesign crossSplitter
added two class function …



@508

17 years 
Jari Häkkinen 
Removed autotools directory that should not exist here (autotools …



@507

17 years 
Jari Häkkinen 
Reverting these files to revision 505; these were changed by mistake.



@506

17 years 
Jari Häkkinen 
Fixed spelling error.



@505

17 years 
Markus Ringnér 
Continuing with adding validation functionality to EnsembleBuilder?. …



@504

17 years 
Markus Ringnér 
Test program for the nearest centroid classifier (ncc) parts of …



@503

17 years 
Markus Ringnér 
First drafts for a distance interface and one implementation (Pearson)



@502

17 years 
Peter 
improved median and percentile functions



@501

17 years 
Jari Häkkinen 
Added missing #insert <cassert>



@500

17 years 
Peter 
implemented median function for gslapi::vector
changed sister …



@499

17 years 
Peter 
set tolerance to round_error



@498

17 years 
Jari Häkkinen 
Fixed type mismatch on Mac.



@497

17 years 
Jari Häkkinen 
Added todo item.



@496

17 years 
Peter 
implemented AveragerPair::msd()



@495

17 years 
Peter 
modified interface for Regression::Local



@494

17 years 
Peter 
added pdf link and creation of Statistics document



@493

17 years 
Peter 
fixed typo in tScore and added make_classifier in SVM



@492

17 years 
Peter 
updated Weighted Statistics document and reimplemented few stuff. …



@491

17 years 
Peter 
made SVM inherit from SupervisedClassifer?



@490

17 years 
Peter 
added tests for AveragerPairWeighted?, corrected docs, and added an …



@489

17 years 
Peter 
added functions to AveragerPairWeighted?. Not tested yet.



@488

17 years 
Peter 
made Score classes ignoring data points with weight zero



@487

17 years 
Peter 
mad covariance calculation coherent with variance and added tests for …


