

@609

17 years 
Markus Ringnér 
Fixes #98



@608

17 years 
Peter 
set properties



@607

17 years 
Peter 
ref #96 included FeatureSelection? in CrossSplitter?. Also happened to …



@606

17 years 
Peter 
ref #96 added missing functionality in FeatureSelector?



@605

17 years 
Peter 
simple test for FeatureSelector?



@604

17 years 
Peter 
ref #96 Changed InputRanker? to return vector of index rather than …



@603

17 years 
Peter 
set properties



@602

17 years 
Peter 
closes #99 documentation on CommandLine? class



@601

17 years 
Peter 
set properties on CommandLine? and Option files



@600

17 years 
Peter 
removed stupid trailing character



@599

17 years 
Peter 
updated corresponding test... well it's not a test it's more of an example.



@598

17 years 
Peter 
Changed interface of CommandLine? so short option is set with char. …



@597

17 years 
Markus Ringnér 
Fixed comments so they pass without some of the complaits from …



@596

17 years 
Peter 
some doc



@595

17 years 
Peter 
added MatrixLookupWeighted? class containing both data and weights



@594

17 years 
Peter 
closes #91 class parsing commandline



@593

17 years 
Markus Ringnér 
Fixed std includes to compile with g++ 4.1.



@592

17 years 
Peter 
added random_shuffle function in Target class



@591

17 years 
Peter 
added random_shuffle function in Target class



@590

17 years 
Peter 
closes #74 documentation



@589

17 years 
Peter 
closes #79 and cleaned up code



@588

17 years 
Markus Ringnér 
Added statistics functions to calculate the higher moments: skewness …



@587

17 years 
Jari Häkkinen 
Moved todo stuff to trac.



@586

17 years 
Peter 
closes #23 redesign of regression classes



@585

17 years 
Markus Ringnér 
Removed forgotten debug printout



@584

17 years 
Markus Ringnér 
Fixed so NCC and IGP works when there are NaNs? in centroids.



@583

17 years 
Markus Ringnér 
Forgot this one in last check in



@582

17 years 
Markus Ringnér 
Modified addding arrays to Averagers so templates are used to allow …



@581

17 years 
Markus Ringnér 
Added class for ingroupproportions score. Removed gslapi::vector …



@580

17 years 
Jari Häkkinen 
Removed LOCAL_INCLUDES.



@579

17 years 
Jari Häkkinen 
Removed obsolete lines.



@578

17 years 
Jari Häkkinen 
Removed stray file.



@577

17 years 
Jari Häkkinen 
More lib changed to c++_tools stuff.



@576

17 years 
Jari Häkkinen 
lib changed to c++_tools



@575

17 years 
Jari Häkkinen 
Renaming lib to c++_tools.



@574

17 years 
Jari Häkkinen 
Removing symbolic link.



@573

17 years 
Jari Häkkinen 
Made documentation generation optional, issue 'make doc' for docs …



@572

17 years 
Jari Häkkinen 
Removed optional creation of doc. Changed package name.



@571

17 years 
Peter 
added function to set CParameter in SVM



@570

17 years 
Jari Häkkinen 
Added copyright statement to files.



@569

17 years 
Peter 
modified prediction from SVM



@568

17 years 
Peter 
minor change in SVM



@567

17 years 
Markus Ringnér 
Fixed error message when ,atrix contains elements not covertible to …



@566

17 years 
Peter 
fixed bug in selected function in Kernels



@565

17 years 
Peter 
removed default row/column in constructors (MatrixLookup? and DataLookup1D)



@564

17 years 
Peter 
weight MatrixLookup? from a KernelLookup?



@563

17 years 
Jari Häkkinen 
Added copyright statement.



@562

17 years 
Jari Häkkinen 
Corrected copyright statement.



@561

17 years 
Jari Häkkinen 
Fixed documentation, added copyright statement.



@560

17 years 
Markus Ringnér 
Minor fixes plus fixed bug in ConsensusInputRanker?



@559

17 years 
Peter 
some changes in EB



@558

17 years 
Peter 
ConsensusInputRanker? now supports weights



@557

17 years 
Peter 
fixed bug in Averager::variance



@556

17 years 
Peter 
correcting assignment operators



@555

17 years 
Peter 
inserted private operator=



@554

17 years 
Markus Ringnér 
added small test



@553

17 years 
Peter 
added range check in KernelLookup? Constructor and clarified doc in …



@552

17 years 
Peter 
killed bug in SVM



@551

17 years 
Markus Ringnér 
Added tests of two nested CrossSplitters? to crossvalidation_test



@550

17 years 
Peter 
removed assert from matrix.h



@549

17 years 
Peter 
forgot to add file



@548

17 years 
Peter 
fixed bug in Kernels



@547

17 years 
Peter 
deleting dynamically allocated kernels in SVM destructor



@546

17 years 
Peter 
inlined function



@545

17 years 
Peter 
added feature selection for SVM



@544

17 years 
Peter 
corrected SVM::make_classifier



@543

17 years 
Peter 
moved destruction of ranker to SupervisedClassifier?



@542

17 years 
Peter 
added predict function in SVM supporting weight



@541

17 years 
Peter 
weights supported in CrossSplitter?



@540

17 years 
Peter 
added weights in CrossSplitter?  not supported in interface though.



@539

17 years 
Peter 
reintroduced prediction in SVM



@538

17 years 
Peter 
corrected test for KernelLookup?



@537

17 years 
Peter 
forked tests and fixed bugs



@536

17 years 
Peter 
fixed problem with ConsensusInputranker?  Now all tests do pass



@535

17 years 
Peter 
changed minor stupid stuff in gslapi



@534

17 years 
Peter 
bug fixes in MatrixLookup? and extended test



@533

17 years 
Peter 
test for MatrixLookup?. NOTE: consensus_inputranker_test still fails



@532

17 years 
Peter 
modified implementation of Parson weighted  now in line with other …



@531

17 years 
Markus Ringnér 
Note there are some problem when creating MatrixLookups? from …



@530

17 years 
Markus Ringnér 
Fixed problems for empty target groups



@529

17 years 
Markus Ringnér 
Added score for signaltonoise ratio (Golub score). Fixed …



@528

17 years 
Peter 
adding source files that were forgotten



@527

17 years 
Peter 
Modified Kernel to be built from MatrixLookup? rather than …



@526

17 years 
Markus Ringnér 
Fixed bug in tScore and in MatrixLookup?. Added support for scoring …



@525

17 years 
Markus Ringnér 
Added structure to Supervised classifier and NCC to support ranking …



@524

17 years 
Peter 
fixed bug PolynimialKernelFunction?  can now handle NaNs? with weights



@523

17 years 
Peter 
add prediction functions to SVM



@522

17 years 
Peter 
added function to add InputRanker? to ConsensusInputRanker?



@521

17 years 
Peter 
extended target and ensemble tests



@520

17 years 
Peter 
changed internal representation in Target



@519

17 years 
Peter 
percentile is now called percentile



@518

17 years 
Peter 
also adding the test for EnsembleBuilder?



@517

17 years 
Peter 
fixed bug in DataLookup2D and created test for EnsembleBuilder?



@516

17 years 
Peter 
added function generating weight matrix with respect to notanumber …



@515

17 years 
Peter 
fixed indentation for doxygen



@514

17 years 
Peter 
generalised binary functionality in Target



@513

17 years 
Peter 
added kernels using weights



@512

17 years 
Peter 
moved common member variables to base class Kernel



@511

17 years 
Peter 
added percentile function for gslapi::vector



@510

17 years 
Peter 
fixed nan return in AveragerPair::ccc()


