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Diff Rev Age Author Log Message
(edit) @714   16 years Jari Häkkinen Addresses #170..
(edit) @713   16 years Peter Fixes #77, #78, #158, and #163, and refs #81
(edit) @712   16 years Jari Häkkinen Forgot to check in FileUtil? test program.
(edit) @711   16 years Jari Häkkinen Fixes #1 and #80. Interface changed.
(edit) @710   16 years Jari Häkkinen Addresses #1 and #80. Changed FileIO to FileUtil? and added tests on …
(edit) @709   16 years Jari Häkkinen Addresses #1 and #80. Issues fixed, but bogus params to functions …
(edit) @708   16 years Peter added info on --enable-debug flag in README file.
(edit) @707   16 years Peter grammar
(edit) @706   16 years Jari Häkkinen Addresses #65 and #170.
(edit) @705   16 years Jari Häkkinen Improved code readability.
(edit) @704   16 years Markus Ringnér Fixes #104. Also fixed inline bug in Averager.h
(edit) @703   16 years Jari Häkkinen Addresses #65 and #170.
(edit) @702   17 years Peter Refs #81 moved mse_ to inherited classes and made mse() pure virtual …
(edit) @701   17 years Peter updated includes
(edit) @700   17 years Peter fixed bug
(edit) @699   17 years Peter fixed docs
(edit) @698   17 years Peter changed variable msd to mse. refs #81
(edit) @697   17 years Peter added features to Regression::OneDimensional? and moved thing not being …
(edit) @696   17 years Peter added msd function in regression
(edit) @695   17 years Peter References #81 improved documentation
(edit) @694   17 years Peter refs #118 Added flag to configure '--enable-debug'. If this flag is …
(edit) @693   17 years Jari Häkkinen Clarified doc and comments.
(edit) @692   17 years Peter Fixes #56 and some doxygen issues for SVM
(edit) @691   17 years Peter added description on microarray namespace
(edit) @690   17 years Peter fixed automake issue
(edit) @689   17 years Peter Fixed some Makefile issues in microarray
(edit) @688   17 years Peter Refs #150 Initial check-in of microarray::DataSet? class. This …
(edit) @687   17 years Jari Häkkinen Clean up of namespace comments.
(edit) @686   17 years Jari Häkkinen Fixes #17. Constness of vectors and views are stricltly maintained. …
(edit) @685   17 years Jari Häkkinen Changing a vector view to be a const view as it should be.
(edit) @684   17 years Jari Häkkinen Cleaning.
(edit) @683   17 years Jari Häkkinen Addresses #153. Clean up of code.
(edit) @682   17 years Jari Häkkinen Addresses #153. Moved regression files to .../yat/regression.
(edit) @681   17 years Jari Häkkinen Moved namespace regression up one level (leaving namespace statistics).
(edit) @680   17 years Jari Häkkinen Addresses #153. Introduced yat namespace. Removed alignment namespace. …
(edit) @679   17 years Markus Ringnér Fixed some minor stuff so it compiles on eddie.thep.lu.se running g++3.2
(edit) @678   17 years Jari Häkkinen Added yat logo.
(edit) @677   17 years Jari Häkkinen Removed stray ! characters.
(edit) @676   17 years Jari Häkkinen Fixed #83. This message applies to this revision and revision:675. …
(edit) @675   17 years Jari Häkkinen References #83. Changing project name to yat. Compilation will fail in …
(edit) @674   17 years Peter fixes #152
(edit) @673   17 years Peter fixed dox in SNR
(edit) @672   17 years Peter added MAD function in statistics
(edit) @671   17 years Peter fixed some percentile dox refs #69
(edit) @670   17 years Peter added cv function in Averager
(edit) @669   17 years Peter #closes #88. SAM score class added
(edit) @668   17 years Peter removing debug code
(edit) @667   17 years Peter refs #151 using Functor now in consensusinputranker to retrieve …
(edit) @666   17 years Peter refs #151, added IRRetreive functors and prepared ConsensusInputRanker? …
(edit) @665   17 years Peter Fixes #142. Added access to score the InputRanking? is based upon. …
(edit) @664   17 years Peter modified TODO to be in line with the Trac pages
(edit) @663   17 years Peter added assignment operator in Target
(edit) @662   17 years Peter refs #57 added class for Naive Baysian Classification. Predict …
(edit) @661   17 years Peter refs #68 added link to Weighted statistics document and svndigest …
(edit) @660   17 years Peter closes #140 moved Index class to its own file and changed name to SVindex
(edit) @659   17 years Peter fixes #147 and #136
(edit) @658   17 years Peter added function in KernelLookup? to create a KernelLookup? from inner …
(edit) @657   17 years Peter finishing cleaning
(edit) @656   17 years Peter fixes #145 cleaning up interface of DataLook2D. Those function were …
(edit) @655   17 years Peter improved documentation on EnsembleBulder::predict
(edit) @654   17 years Peter replaced some double-spaces with tabs making Doxygen parsing the …
(edit) @653   17 years Peter updated copyright statement
(edit) @652   17 years Peter added tag in config file so namespaces are included in sorting class …
(edit) @651   17 years Peter corrected dox in Kernel classes
(edit) @650   17 years Peter corrected documentation to be in line with guidinglines
(edit) @649   17 years Jari Häkkinen Fixed typo in doxygen comment.
(edit) @648   17 years Peter fixes #133 removed all errors reported from Doxygen. Only one error …
(edit) @647   17 years Peter fixes #137 added flag for doxygen to write includes in preferable way.
(edit) @646   17 years Peter removing pointer_comare because it is not a pointer_compare but rather …
(edit) @645   17 years Markus Ringnér Minor things
(edit) @644   17 years Jari Häkkinen Set svndigest:ignore property on test data.
(edit) @643   17 years Jari Häkkinen These are now superseeded by svndigest project, …
(edit) @642   17 years Peter adding class for selecting features by random
(edit) @641   17 years Peter added tag for Doxygen preprocessor to exclude internal Index class in SVM
(edit) @640   17 years Peter fixes #132 and #95, and refs #135 replaced bool owner in DataLookup2D …
(edit) @639   17 years Markus Ringnér Fixed documentation bugs
(edit) @638   17 years Markus Ringnér Fixes #131
(edit) @637   17 years Peter fixes #122
(edit) @636   17 years Peter closes #120 removed weights from SubsetGenerator?
(edit) @635   17 years Peter closes #106 make_classifier is again taking DataLookup2D and Target …
(edit) @634   17 years Markus Ringnér Fixed NCC predict to work with MatrixLookupWeighted?
(edit) @633   17 years Markus Ringnér Minor fix
(edit) @632   17 years Markus Ringnér Changes in NCC to support weight using MatrixLookupWeighted?. Still …
(edit) @631   17 years Peter fixes #102 added weighted() to DataLookup2D.
(edit) @630   17 years Peter fixes #117
(edit) @629   17 years Peter fixes #125 removing obsolete function and cleaning in Kernel classes.
(edit) @628   17 years Peter fixes #116 and #90 removed classes KernelWeighted_SEV and …
(edit) @627   17 years Peter fixes #124 also extended interface of AveragerPairWeighted? supporting …
(edit) @626   17 years Peter fixes #113 and #114 removed Featureselection from NCC and …
(edit) @625   17 years Peter fixes #115 and ref #113 removed feature selection from SVM
(edit) @624   17 years Peter fixes #109 and #110
(edit) @623   17 years Peter fixes #112 and refs #123 added overloaded function score taking Target …
(edit) @622   17 years Peter fixes #111
(edit) @621   17 years Peter fixes #108 SubsetGenerator? with featureselection is now supported for …
(edit) @620   17 years Markus Ringnér Fixed problems with Averager that sometimes appeared as failures in …
(edit) @619   17 years Peter fixes #107 and refs #105 fixed bug in EnsembleBuilder? and removed some …
(edit) @617   17 years Jari Häkkinen Cleaned up stray gslapi stuff.
(edit) @616   17 years Jari Häkkinen Removed gslapi namespace and put the code into utility namespace. Move …
(edit) @615   17 years Peter ref #60 NOTE: there is most likely a bug around. I have removed the …
(edit) @614   17 years Jari Häkkinen Minor fixes in doxygen documentation.
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