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Diff Rev Age Author Log Message
(edit) @763   16 years Peter added project number in doxygen. NOTE: this need to be bumbed at …
(edit) @762   16 years Jari Häkkinen Fixes #76. Creating/recreating BLAS support matrix only when needed.
(edit) @761   16 years Jari Häkkinen Fixes #7.
(edit) @760   16 years Peter throw exception when detecting invalid 2x2 table. Fixes #26
(edit) @759   16 years Jari Häkkinen Fixes #171 and addresses #2. A few more GSL_error exceptions. Removed …
(edit) @758   16 years Jari Häkkinen Fixes #2. Finalized adding GSL_error exceptions.
(edit) @757   16 years Jari Häkkinen Fixed #include statemenst and forward declarations. asserts in headers …
(edit) @756   16 years Jari Häkkinen Added missing #include
(edit) @755   16 years Jari Häkkinen Addresses #2 and #65. Continued adding GSL_error exceptions, and added …
(edit) @754   16 years Jari Häkkinen Addresses #2 and #65. Continued adding GSL_error exceptions, and added …
(edit) @753   16 years Jari Häkkinen Addresses #2. Continued adding GSL_error exceptions.
(edit) @752   16 years Jari Häkkinen Moving a function implementation from .h to .cc.
(edit) @751   16 years Jari Häkkinen Addresses #2. Continued adding GSL_error exceptions.
(edit) @750   16 years Jari Häkkinen Addresses #2. Continued adding GSL_error exceptions.
(edit) @749   16 years Peter fixes #72
(edit) @748   16 years Peter documentation for SNR improved. fixes #123
(edit) @747   16 years Peter replaced includes in header files with forward declarations when …
(edit) @746   16 years Peter Fixes #146
(edit) @745   16 years Peter fixes #154
(edit) @744   16 years Peter corrected some typos
(edit) @743   16 years Peter Changed function to return reference to member variable string. This …
(edit) @742   16 years Peter added test that LinearWeighte? is equal to PolynomialWeighted?(1) fixes #166
(edit) @741   16 years Peter fixes #161 and #164
(edit) @740   16 years Peter added more test in MultiDimWeighted? and moved some stuff to be …
(edit) @739   16 years Peter fixes #178 and removes a bug in MultiDimensional?
(edit) @738   16 years Jari Häkkinen Fixes #8 and #179, addresses #2.
(edit) @737   16 years Peter moving vector matrix multiplication to matrix.h and matrix.cc
(edit) @736   16 years Peter Fixes #176
(edit) @735   16 years Peter forgot to check in matrix.h
(edit) @734   16 years Peter added vector*matrix and matrix*vector operators. fixes #18
(edit) @733   16 years Peter fixes #53
(edit) @732   16 years Peter fixes #42
(edit) @731   16 years Peter added test for multidimensional weighted and straight version
(edit) @730   16 years Peter fixes #167 and #160
(edit) @729   16 years Peter Fixes #159. Also removed some inlines in OneDimensionalWeighted? by …
(edit) @728   16 years Peter added virtual function s2 in OneDimensional?.
(edit) @727   16 years Peter fixes #177
(edit) @726   16 years Peter fixes #165 added test checking Linear Regression is equivalent to …
(edit) @725   16 years Peter removing includes
(edit) @724   16 years Jari Häkkinen Removed redundant #includes.
(edit) @723   16 years Jari Häkkinen Fixes #10. Removed read_to*(std::vector..) functionality.
(edit) @722   16 years Markus Ringnér Closes #129
(edit) @721   16 years Peter fixes #174 IRScore.h removed
(edit) @720   16 years Jari Häkkinen Fixes #170. Almost all inlines removed, some classes have no cc file.
(edit) @719   16 years Jari Häkkinen Fixes #172.
(edit) @718   16 years Jari Häkkinen Addresses #170.
(edit) @717   16 years Jari Häkkinen Removed long time non-implemented function declarations ... not needed?
(edit) @716   16 years Jari Häkkinen Addresses #170.
(edit) @715   16 years Jari Häkkinen Addresses #170.
(edit) @714   16 years Jari Häkkinen Addresses #170..
(edit) @713   16 years Peter Fixes #77, #78, #158, and #163, and refs #81
(edit) @712   16 years Jari Häkkinen Forgot to check in FileUtil? test program.
(edit) @711   16 years Jari Häkkinen Fixes #1 and #80. Interface changed.
(edit) @710   16 years Jari Häkkinen Addresses #1 and #80. Changed FileIO to FileUtil? and added tests on …
(edit) @709   16 years Jari Häkkinen Addresses #1 and #80. Issues fixed, but bogus params to functions …
(edit) @708   16 years Peter added info on --enable-debug flag in README file.
(edit) @707   16 years Peter grammar
(edit) @706   16 years Jari Häkkinen Addresses #65 and #170.
(edit) @705   16 years Jari Häkkinen Improved code readability.
(edit) @704   16 years Markus Ringnér Fixes #104. Also fixed inline bug in Averager.h
(edit) @703   16 years Jari Häkkinen Addresses #65 and #170.
(edit) @702   17 years Peter Refs #81 moved mse_ to inherited classes and made mse() pure virtual …
(edit) @701   17 years Peter updated includes
(edit) @700   17 years Peter fixed bug
(edit) @699   17 years Peter fixed docs
(edit) @698   17 years Peter changed variable msd to mse. refs #81
(edit) @697   17 years Peter added features to Regression::OneDimensional? and moved thing not being …
(edit) @696   17 years Peter added msd function in regression
(edit) @695   17 years Peter References #81 improved documentation
(edit) @694   17 years Peter refs #118 Added flag to configure '--enable-debug'. If this flag is …
(edit) @693   17 years Jari Häkkinen Clarified doc and comments.
(edit) @692   17 years Peter Fixes #56 and some doxygen issues for SVM
(edit) @691   17 years Peter added description on microarray namespace
(edit) @690   17 years Peter fixed automake issue
(edit) @689   17 years Peter Fixed some Makefile issues in microarray
(edit) @688   17 years Peter Refs #150 Initial check-in of microarray::DataSet? class. This …
(edit) @687   17 years Jari Häkkinen Clean up of namespace comments.
(edit) @686   17 years Jari Häkkinen Fixes #17. Constness of vectors and views are stricltly maintained. …
(edit) @685   17 years Jari Häkkinen Changing a vector view to be a const view as it should be.
(edit) @684   17 years Jari Häkkinen Cleaning.
(edit) @683   17 years Jari Häkkinen Addresses #153. Clean up of code.
(edit) @682   17 years Jari Häkkinen Addresses #153. Moved regression files to .../yat/regression.
(edit) @681   17 years Jari Häkkinen Moved namespace regression up one level (leaving namespace statistics).
(edit) @680   17 years Jari Häkkinen Addresses #153. Introduced yat namespace. Removed alignment namespace. …
(edit) @679   17 years Markus Ringnér Fixed some minor stuff so it compiles on eddie.thep.lu.se running g++3.2
(edit) @678   17 years Jari Häkkinen Added yat logo.
(edit) @677   17 years Jari Häkkinen Removed stray ! characters.
(edit) @676   17 years Jari Häkkinen Fixed #83. This message applies to this revision and revision:675. …
(edit) @675   17 years Jari Häkkinen References #83. Changing project name to yat. Compilation will fail in …
(edit) @674   17 years Peter fixes #152
(edit) @673   17 years Peter fixed dox in SNR
(edit) @672   17 years Peter added MAD function in statistics
(edit) @671   17 years Peter fixed some percentile dox refs #69
(edit) @670   17 years Peter added cv function in Averager
(edit) @669   17 years Peter #closes #88. SAM score class added
(edit) @668   17 years Peter removing debug code
(edit) @667   17 years Peter refs #151 using Functor now in consensusinputranker to retrieve …
(edit) @666   17 years Peter refs #151, added IRRetreive functors and prepared ConsensusInputRanker? …
(edit) @665   17 years Peter Fixes #142. Added access to score the InputRanking? is based upon. …
(edit) @664   17 years Peter modified TODO to be in line with the Trac pages
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