

@763

16 years 
Peter 
added project number in doxygen. NOTE: this need to be bumbed at …



@762

16 years 
Jari Häkkinen 
Fixes #76. Creating/recreating BLAS support matrix only when needed.



@761

16 years 
Jari Häkkinen 
Fixes #7.



@760

16 years 
Peter 
throw exception when detecting invalid 2x2 table. Fixes #26



@759

16 years 
Jari Häkkinen 
Fixes #171 and addresses #2. A few more GSL_error exceptions. Removed …



@758

16 years 
Jari Häkkinen 
Fixes #2. Finalized adding GSL_error exceptions.



@757

16 years 
Jari Häkkinen 
Fixed #include statemenst and forward declarations. asserts in headers …



@756

16 years 
Jari Häkkinen 
Added missing #include



@755

16 years 
Jari Häkkinen 
Addresses #2 and #65. Continued adding GSL_error exceptions, and added …



@754

16 years 
Jari Häkkinen 
Addresses #2 and #65. Continued adding GSL_error exceptions, and added …



@753

16 years 
Jari Häkkinen 
Addresses #2. Continued adding GSL_error exceptions.



@752

16 years 
Jari Häkkinen 
Moving a function implementation from .h to .cc.



@751

16 years 
Jari Häkkinen 
Addresses #2. Continued adding GSL_error exceptions.



@750

16 years 
Jari Häkkinen 
Addresses #2. Continued adding GSL_error exceptions.



@749

16 years 
Peter 
fixes #72



@748

16 years 
Peter 
documentation for SNR improved. fixes #123



@747

16 years 
Peter 
replaced includes in header files with forward declarations when …



@746

16 years 
Peter 
Fixes #146



@745

16 years 
Peter 
fixes #154



@744

16 years 
Peter 
corrected some typos



@743

16 years 
Peter 
Changed function to return reference to member variable string. This …



@742

16 years 
Peter 
added test that LinearWeighte? is equal to PolynomialWeighted?(1) fixes #166



@741

16 years 
Peter 
fixes #161 and #164



@740

16 years 
Peter 
added more test in MultiDimWeighted? and moved some stuff to be …



@739

16 years 
Peter 
fixes #178 and removes a bug in MultiDimensional?



@738

16 years 
Jari Häkkinen 
Fixes #8 and #179, addresses #2.



@737

16 years 
Peter 
moving vector matrix multiplication to matrix.h and matrix.cc



@736

16 years 
Peter 
Fixes #176



@735

16 years 
Peter 
forgot to check in matrix.h



@734

16 years 
Peter 
added vector*matrix and matrix*vector operators. fixes #18



@733

16 years 
Peter 
fixes #53



@732

16 years 
Peter 
fixes #42



@731

16 years 
Peter 
added test for multidimensional weighted and straight version



@730

16 years 
Peter 
fixes #167 and #160



@729

16 years 
Peter 
Fixes #159. Also removed some inlines in OneDimensionalWeighted? by …



@728

16 years 
Peter 
added virtual function s2 in OneDimensional?.



@727

16 years 
Peter 
fixes #177



@726

16 years 
Peter 
fixes #165 added test checking Linear Regression is equivalent to …



@725

16 years 
Peter 
removing includes



@724

16 years 
Jari Häkkinen 
Removed redundant #includes.



@723

16 years 
Jari Häkkinen 
Fixes #10. Removed read_to*(std::vector..) functionality.



@722

16 years 
Markus Ringnér 
Closes #129



@721

16 years 
Peter 
fixes #174 IRScore.h removed



@720

16 years 
Jari Häkkinen 
Fixes #170. Almost all inlines removed, some classes have no cc file.



@719

16 years 
Jari Häkkinen 
Fixes #172.



@718

16 years 
Jari Häkkinen 
Addresses #170.



@717

16 years 
Jari Häkkinen 
Removed long time nonimplemented function declarations ... not needed?



@716

16 years 
Jari Häkkinen 
Addresses #170.



@715

16 years 
Jari Häkkinen 
Addresses #170.



@714

16 years 
Jari Häkkinen 
Addresses #170..



@713

16 years 
Peter 
Fixes #77, #78, #158, and #163, and refs #81



@712

16 years 
Jari Häkkinen 
Forgot to check in FileUtil? test program.



@711

16 years 
Jari Häkkinen 
Fixes #1 and #80. Interface changed.



@710

16 years 
Jari Häkkinen 
Addresses #1 and #80. Changed FileIO to FileUtil? and added tests on …



@709

16 years 
Jari Häkkinen 
Addresses #1 and #80. Issues fixed, but bogus params to functions …



@708

16 years 
Peter 
added info on enabledebug flag in README file.



@707

16 years 
Peter 
grammar



@706

16 years 
Jari Häkkinen 
Addresses #65 and #170.



@705

16 years 
Jari Häkkinen 
Improved code readability.



@704

16 years 
Markus Ringnér 
Fixes #104. Also fixed inline bug in Averager.h



@703

16 years 
Jari Häkkinen 
Addresses #65 and #170.



@702

17 years 
Peter 
Refs #81 moved mse_ to inherited classes and made mse() pure virtual …



@701

17 years 
Peter 
updated includes



@700

17 years 
Peter 
fixed bug



@699

17 years 
Peter 
fixed docs



@698

17 years 
Peter 
changed variable msd to mse. refs #81



@697

17 years 
Peter 
added features to Regression::OneDimensional? and moved thing not being …



@696

17 years 
Peter 
added msd function in regression



@695

17 years 
Peter 
References #81 improved documentation



@694

17 years 
Peter 
refs #118 Added flag to configure 'enabledebug'. If this flag is …



@693

17 years 
Jari Häkkinen 
Clarified doc and comments.



@692

17 years 
Peter 
Fixes #56 and some doxygen issues for SVM



@691

17 years 
Peter 
added description on microarray namespace



@690

17 years 
Peter 
fixed automake issue



@689

17 years 
Peter 
Fixed some Makefile issues in microarray



@688

17 years 
Peter 
Refs #150 Initial checkin of microarray::DataSet? class. This …



@687

17 years 
Jari Häkkinen 
Clean up of namespace comments.



@686

17 years 
Jari Häkkinen 
Fixes #17. Constness of vectors and views are stricltly
maintained. …



@685

17 years 
Jari Häkkinen 
Changing a vector view to be a const view as it should be.



@684

17 years 
Jari Häkkinen 
Cleaning.



@683

17 years 
Jari Häkkinen 
Addresses #153. Clean up of code.



@682

17 years 
Jari Häkkinen 
Addresses #153. Moved regression files to .../yat/regression.



@681

17 years 
Jari Häkkinen 
Moved namespace regression up one level (leaving namespace statistics).



@680

17 years 
Jari Häkkinen 
Addresses #153. Introduced yat namespace. Removed alignment namespace. …



@679

17 years 
Markus Ringnér 
Fixed some minor stuff so it compiles on eddie.thep.lu.se running g++3.2



@678

17 years 
Jari Häkkinen 
Added yat logo.



@677

17 years 
Jari Häkkinen 
Removed stray ! characters.



@676

17 years 
Jari Häkkinen 
Fixed #83. This message applies to this revision and
revision:675. …



@675

17 years 
Jari Häkkinen 
References #83. Changing project name to yat. Compilation will fail in …



@674

17 years 
Peter 
fixes #152



@673

17 years 
Peter 
fixed dox in SNR



@672

17 years 
Peter 
added MAD function in statistics



@671

17 years 
Peter 
fixed some percentile dox refs #69



@670

17 years 
Peter 
added cv function in Averager



@669

17 years 
Peter 
#closes #88. SAM score class added



@668

17 years 
Peter 
removing debug code



@667

17 years 
Peter 
refs #151 using Functor now in consensusinputranker to retrieve …



@666

17 years 
Peter 
refs #151, added IRRetreive functors and prepared ConsensusInputRanker? …



@665

17 years 
Peter 
Fixes #142. Added access to score the InputRanking? is based upon. …



@664

17 years 
Peter 
modified TODO to be in line with the Trac pages


