

@879

16 years 
Markus Ringnér 
Added support to utility::vector for gslfunctions that finds indices …



@878

16 years 
Markus Ringnér 
Problem with previous checkin fixed



@877

16 years 
Markus Ringnér 
This revision breaks the vector_test. I know this is against the rules …



@876

16 years 
Jari Häkkinen 
Added missing #include <cassert>



@875

16 years 
Peter 
rewriting SW algo, making code clearer, and perhaps removing a few bugs...?



@874

16 years 
Markus Ringnér 
Fixes ticket:237



@873

16 years 
Peter 
fixing some docs



@872

16 years 
Peter 
Some docs for TypeInfo?



@871

16 years 
Peter 
minor docs fix



@870

16 years 
Peter 
After reinstalling yat, the issue vanished, so here is the test for …



@869

16 years 
Peter 
Adding SmithWaterman local alignment and modified ssearch to use this …



@868

16 years 
Peter 
fixes ticket:236



@867

16 years 
Peter 
adding function doing a SSEARCH between two strings



@866

16 years 
Markus Ringnér 
refs #236. EnsembleBuilder::predict bug fixed for matrixbased …



@865

16 years 
Peter 
changing URL to http://trac.thep.lu.se/trac/yat



@864

16 years 
Markus Ringnér 
Added a lot of tests to feature_selection_test



@863

16 years 
Markus Ringnér 
Fixed bug in FeatureSelectorIR that resulted in incorrect results!.



@862

16 years 
Markus Ringnér 
Fixed bug in InputRanker? that sometimes gave rise to a bus error …



@861

16 years 
Peter 
adding class to store and compare std::type_info



@860

16 years 
Peter 
fixes #149  Target constructor from Target and vector<string>



@859

16 years 
Peter 
updated copyright



@858

16 years 
Peter 
refs #148 in EnsembleBuilder?



@857

16 years 
Peter 
refs #148 in NCC



@856

16 years 
Markus Ringnér 
The SNR score is now ok again and renamed SNRScore. Fixes #235"



@855

16 years 
Peter 
trac has moved to http://trac.thep.lu.se/trac/yat



@854

16 years 
Peter 
updated svndigest config file



@853

16 years 
Peter 
svndigest config file



@852

16 years 
Jari Häkkinen 
Fixes #228.



@851

16 years 
Jari Häkkinen 
Fixes #229.



@850

16 years 
Peter 
fixes #227



@848

16 years 
Jari Häkkinen 
Merged log:/branches/0.3.1#838:846 to trunk.



@842

16 years 
Peter 
fixed typo in error msg



@837

16 years 
Peter 
Fixed include to be correct also when being casesensitive. refs #220 …



@836

16 years 
Jari Häkkinen 
Bumped version number.



@834

16 years 
Jari Häkkinen 
Bumped version number.



@833

16 years 
Jari Häkkinen 
Addresses #217. Fixed so that 'make distcheck' compiles but tests fail …



@832

16 years 
Peter 
Refs #217 cleaning up makefile.am



@831

16 years 
Peter 
Refs #185.



@830

16 years 
Jari Häkkinen 
Fixes #206.



@829

16 years 
Jari Häkkinen 
Fixes #173.



@828

16 years 
Peter 
Generalized ConsenusInputRanker?, Fixes #151



@827

16 years 
Peter 
added Functors to be used in CIR. Refs #151



@826

16 years 
Peter 
documentation and some minor fixes Fixes #135



@825

16 years 
Peter 
removed minmax functions and moved shuffle into vector.*



@824

16 years 
Peter 
Moved Ensemble stuff in subset_egnerator_test to ensemble_test. Also …



@823

16 years 
Peter 
BootstrapSampler?. Fixes #134



@822

16 years 
Peter 
redesigned tTest fixes #212 and #156



@821

16 years 
Peter 
Modified ROC class to use AUC class in calculation of ROC area. Refs #101



@820

16 years 
Peter 
Changed name again. ROCScore is now called AUC. Also fixed several …



@819

16 years 
Peter 



@818

16 years 
Peter 
It depends on the use case here, but I think I agree so hist_ is no …



@817

16 years 
Peter 
Fixes #143



@816

16 years 
Peter 
test for Distance. Fixes #198



@815

16 years 
Peter 
added constructor for DataLookup1D from a utility::vector



@814

16 years 
Peter 
fixes #66



@813

16 years 
Peter 
Predict in NBC. Fixes #57



@812

16 years 
Peter 
implemented NBC predict. Have to check what happens in the weighted …



@811

16 years 
Peter 
dox



@810

16 years 
Jari Häkkinen 
Changed to obey the general wisdom: If you write the same code snipet …



@809

16 years 
Jari Häkkinen 
Fixed spelling.



@808

16 years 
Peter 
previous argument was invalid, but here is an implementation. Fixes #205



@807

16 years 
Peter 
Ok, no comments from enyone so I assume it is ok to remove the list of …



@806

16 years 
Peter 
removed test as well :O



@805

16 years 
Peter 
removed Option and Commandline. Not mature enough for a release. …



@803

16 years 
Peter 
removed Microarray namespce and its conents



@802

16 years 
Peter 
removed styles sheet in config



@801

16 years 
Peter 
and forgot another thing



@800

16 years 
Peter 



@799

16 years 
Peter 
NOTE: you will probably need to rerun configure to create directory …



@798

16 years 
Jari Häkkinen 
Removed unnecessary #include. Added tests for random number distributions.



@797

16 years 
Jari Häkkinen 
Fixes #191. This is the best that can be done with the current design.



@796

16 years 
Jari Häkkinen 
Fixes #201.



@795

16 years 
Peter 
confusing to use argv[0] since it is nout test/vector_test but rather …



@794

16 years 
Peter 
making yat compile



@793

16 years 
Jari Häkkinen 
Fixes #193. Last test for the new functionality added to matrix.



@792

16 years 
Jari Häkkinen 
Addresses #193. matrix now works as outlined in the ticket
discussion. …



@791

16 years 
Jari Häkkinen 
Addresses #193. Added missing implementations.



@790

16 years 
Jari Häkkinen 
Addresses #193. Fixing doxygen docs, and operator=.



@789

16 years 
Jari Häkkinen 
Addresses #193. vector now works as outlined here. Added some …



@788

16 years 
Jari Häkkinen 
Improved comparison operator and equal function doxygen doc. Added for …



@787

16 years 
Peter 
removed v_const in vector since it never used for anything but only …



@786

16 years 
Peter 
added a test in vector_test



@785

16 years 
Peter 
I think it is clearer if gsl_vector_const_view is declared as const …



@784

16 years 
Jari Häkkinen 
References #155. Removed potential null pointer usage. Some unwanted …



@783

16 years 
Jari Häkkinen 
Fixes #155. Added asserts to check vectors in all nonconst functions …



@782

16 years 
Jari Häkkinen 
Fixes #195.



@781

16 years 
Peter 
changing name to ROCScore and also added some cassert includes



@780

16 years 
Jari Häkkinen 
Fixed exception message.



@779

16 years 
Peter 
Refs #101



@778

16 years 
Peter 
added ROCscore class. refs #101



@777

16 years 
Peter 
Changed Fisher interface dramatically. No longer inherited from Score. …



@776

16 years 
Jari Häkkinen 
Fixed typos.



@775

16 years 
Jari Häkkinen 
Fixes #200.



@774

16 years 
Jari Häkkinen 
Fixes #194.



@773

16 years 
Jari Häkkinen 
Fixes #138. Removed add, sub, scale and added appropriate operators.



@772

16 years 
Peter 
fixes #126 and added some functions in AveragerPair? and …



@771

16 years 
Jari Häkkinen 
Bumped version number.



@769

16 years 
Jari Häkkinen 
Bumped version number.



@768

16 years 
Peter 
addresses #57



@767

16 years 
Peter 
Fixes #65


