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@891
|
15 years |
Markus Ringnér |
Minor modifications
|
|
|
|
@890
|
15 years |
Markus Ringnér |
Refs #245 #246 #247
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@889
|
15 years |
Markus Ringnér |
Refs #245. A new structure to calculate distances between vectors that …
|
|
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|
@888
|
15 years |
Peter |
fixing doxygen parsing
|
|
|
|
@887
|
15 years |
Peter |
made add function template so it accepts AveragerWeighted? too. Also …
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|
@886
|
15 years |
Peter |
add function for Averager and AveragerPair? taking iterators refs #246
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|
@885
|
15 years |
Peter |
adding some cleaning
|
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|
@884
|
15 years |
Peter |
some documentation
|
|
|
|
@883
|
16 years |
Peter |
fixing problems with iterator -> const_iterator conversion
|
|
|
|
@882
|
16 years |
Peter |
fixing includes - sorry about that
|
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|
@881
|
16 years |
Peter |
merged constIterator into Iterator and added an extra template …
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@880
|
16 years |
Peter |
refs #244
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@879
|
16 years |
Markus Ringnér |
Added support to utility::vector for gsl-functions that finds indices …
|
|
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@878
|
16 years |
Markus Ringnér |
Problem with previous checkin fixed
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|
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|
@877
|
16 years |
Markus Ringnér |
This revision breaks the vector_test. I know this is against the rules …
|
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|
@876
|
16 years |
Jari Häkkinen |
Added missing #include <cassert>
|
|
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|
@875
|
16 years |
Peter |
rewriting SW algo, making code clearer, and perhaps removing a few bugs...?
|
|
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|
@874
|
16 years |
Markus Ringnér |
Fixes ticket:237
|
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|
@873
|
16 years |
Peter |
fixing some docs
|
|
|
|
@872
|
16 years |
Peter |
Some docs for TypeInfo?
|
|
|
|
@871
|
16 years |
Peter |
minor docs fix
|
|
|
|
@870
|
16 years |
Peter |
After re-installing yat, the issue vanished, so here is the test for …
|
|
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|
@869
|
16 years |
Peter |
Adding Smith-Waterman local alignment and modified ssearch to use this …
|
|
|
|
@868
|
16 years |
Peter |
fixes ticket:236
|
|
|
|
@867
|
16 years |
Peter |
adding function doing a SSEARCH between two strings
|
|
|
|
@866
|
16 years |
Markus Ringnér |
refs #236. EnsembleBuilder::predict bug fixed for matrix-based …
|
|
|
|
@865
|
16 years |
Peter |
changing URL to http://trac.thep.lu.se/trac/yat
|
|
|
|
@864
|
16 years |
Markus Ringnér |
Added a lot of tests to feature_selection_test
|
|
|
|
@863
|
16 years |
Markus Ringnér |
Fixed bug in FeatureSelectorIR that resulted in incorrect results!.
|
|
|
|
@862
|
16 years |
Markus Ringnér |
Fixed bug in InputRanker? that sometimes gave rise to a bus error …
|
|
|
|
@861
|
16 years |
Peter |
adding class to store and compare std::type_info
|
|
|
|
@860
|
16 years |
Peter |
fixes #149 - Target constructor from Target and vector<string>
|
|
|
|
@859
|
16 years |
Peter |
updated copyright
|
|
|
|
@858
|
16 years |
Peter |
refs #148 in EnsembleBuilder?
|
|
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|
@857
|
16 years |
Peter |
refs #148 in NCC
|
|
|
|
@856
|
16 years |
Markus Ringnér |
The SNR score is now ok again and renamed SNRScore. Fixes #235"
|
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|
|
@855
|
16 years |
Peter |
trac has moved to http://trac.thep.lu.se/trac/yat
|
|
|
|
@854
|
16 years |
Peter |
updated svndigest config file
|
|
|
|
@853
|
16 years |
Peter |
svndigest config file
|
|
|
|
@852
|
16 years |
Jari Häkkinen |
Fixes #228.
|
|
|
|
@851
|
16 years |
Jari Häkkinen |
Fixes #229.
|
|
|
|
@850
|
16 years |
Peter |
fixes #227
|
|
|
|
@848
|
16 years |
Jari Häkkinen |
Merged log:/branches/0.3.1#838:846 to trunk.
|
|
|
|
@842
|
16 years |
Peter |
fixed typo in error msg
|
|
|
|
@837
|
16 years |
Peter |
Fixed include to be correct also when being case-sensitive. refs #220 …
|
|
|
|
@836
|
16 years |
Jari Häkkinen |
Bumped version number.
|
|
|
|
@834
|
16 years |
Jari Häkkinen |
Bumped version number.
|
|
|
|
@833
|
16 years |
Jari Häkkinen |
Addresses #217. Fixed so that 'make distcheck' compiles but tests fail …
|
|
|
|
@832
|
16 years |
Peter |
Refs #217 cleaning up makefile.am
|
|
|
|
@831
|
16 years |
Peter |
Refs #185.
|
|
|
|
@830
|
16 years |
Jari Häkkinen |
Fixes #206.
|
|
|
|
@829
|
16 years |
Jari Häkkinen |
Fixes #173.
|
|
|
|
@828
|
16 years |
Peter |
Generalized ConsenusInputRanker?, Fixes #151
|
|
|
|
@827
|
16 years |
Peter |
added Functors to be used in CIR. Refs #151
|
|
|
|
@826
|
16 years |
Peter |
documentation and some minor fixes Fixes #135
|
|
|
|
@825
|
16 years |
Peter |
removed minmax functions and moved shuffle into vector.*
|
|
|
|
@824
|
16 years |
Peter |
Moved Ensemble stuff in subset_egnerator_test to ensemble_test. Also …
|
|
|
|
@823
|
16 years |
Peter |
BootstrapSampler?. Fixes #134
|
|
|
|
@822
|
16 years |
Peter |
redesigned tTest fixes #212 and #156
|
|
|
|
@821
|
16 years |
Peter |
Modified ROC class to use AUC class in calculation of ROC area. Refs #101
|
|
|
|
@820
|
16 years |
Peter |
Changed name again. ROCScore is now called AUC. Also fixed several …
|
|
|
|
@819
|
16 years |
Peter |
|
|
|
|
@818
|
16 years |
Peter |
It depends on the use case here, but I think I agree so hist_ is no …
|
|
|
|
@817
|
16 years |
Peter |
Fixes #143
|
|
|
|
@816
|
16 years |
Peter |
test for Distance. Fixes #198
|
|
|
|
@815
|
16 years |
Peter |
added constructor for DataLookup1D from a utility::vector
|
|
|
|
@814
|
16 years |
Peter |
fixes #66
|
|
|
|
@813
|
16 years |
Peter |
Predict in NBC. Fixes #57
|
|
|
|
@812
|
16 years |
Peter |
implemented NBC predict. Have to check what happens in the weighted …
|
|
|
|
@811
|
16 years |
Peter |
dox
|
|
|
|
@810
|
16 years |
Jari Häkkinen |
Changed to obey the general wisdom: If you write the same code snipet …
|
|
|
|
@809
|
16 years |
Jari Häkkinen |
Fixed spelling.
|
|
|
|
@808
|
16 years |
Peter |
previous argument was invalid, but here is an implementation. Fixes #205
|
|
|
|
@807
|
16 years |
Peter |
Ok, no comments from enyone so I assume it is ok to remove the list of …
|
|
|
|
@806
|
16 years |
Peter |
removed test as well :O
|
|
|
|
@805
|
16 years |
Peter |
removed Option and Commandline. Not mature enough for a release. …
|
|
|
|
@803
|
16 years |
Peter |
removed Microarray namespce and its conents
|
|
|
|
@802
|
16 years |
Peter |
removed styles sheet in config
|
|
|
|
@801
|
16 years |
Peter |
and forgot another thing
|
|
|
|
@800
|
16 years |
Peter |
|
|
|
|
@799
|
16 years |
Peter |
NOTE: you will probably need to rerun configure to create directory …
|
|
|
|
@798
|
16 years |
Jari Häkkinen |
Removed unnecessary #include. Added tests for random number distributions.
|
|
|
|
@797
|
16 years |
Jari Häkkinen |
Fixes #191. This is the best that can be done with the current design.
|
|
|
|
@796
|
16 years |
Jari Häkkinen |
Fixes #201.
|
|
|
|
@795
|
16 years |
Peter |
confusing to use argv[0] since it is nout test/vector_test but rather …
|
|
|
|
@794
|
16 years |
Peter |
making yat compile
|
|
|
|
@793
|
16 years |
Jari Häkkinen |
Fixes #193. Last test for the new functionality added to matrix.
|
|
|
|
@792
|
16 years |
Jari Häkkinen |
Addresses #193. matrix now works as outlined in the ticket
discussion. …
|
|
|
|
@791
|
16 years |
Jari Häkkinen |
Addresses #193. Added missing implementations.
|
|
|
|
@790
|
16 years |
Jari Häkkinen |
Addresses #193. Fixing doxygen docs, and operator=.
|
|
|
|
@789
|
16 years |
Jari Häkkinen |
Addresses #193. vector now works as outlined here. Added some …
|
|
|
|
@788
|
16 years |
Jari Häkkinen |
Improved comparison operator and equal function doxygen doc. Added for …
|
|
|
|
@787
|
16 years |
Peter |
removed v_const in vector since it never used for anything but only …
|
|
|
|
@786
|
16 years |
Peter |
added a test in vector_test
|
|
|
|
@785
|
16 years |
Peter |
I think it is clearer if gsl_vector_const_view is declared as const …
|
|
|
|
@784
|
16 years |
Jari Häkkinen |
References #155. Removed potential null pointer usage. Some unwanted …
|
|
|
|
@783
|
16 years |
Jari Häkkinen |
Fixes #155. Added asserts to check vectors in all non-const functions …
|
|
|
|
@782
|
16 years |
Jari Häkkinen |
Fixes #195.
|
|
|
|
@781
|
16 years |
Peter |
changing name to ROCScore and also added some cassert includes
|
|
|
|
@780
|
16 years |
Jari Häkkinen |
Fixed exception message.
|
|
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|
