

@965

15 years 
Peter 
Adding CommandLine? class. finishes #240



@964

15 years 
Peter 
adding function to set maximal training epochs in SVM, and fixed so C …



@963

15 years 
Peter 
fixes #268. SVM throws if when train() fails



@962

15 years 
Peter 
setting svndigest:ignore property on file copied from gsl



@961

15 years 
Peter 
correcting NBC train. refs ticket:271



@960

15 years 
Peter 
fixed ticket:271



@959

15 years 
Peter 
Fixed so NBC and SVM are throwing when unexpected DataLookup2D is …



@958

15 years 
Peter 
allowing mixture of weighted and unweighted iterators in vector_distance



@957

15 years 
Peter 
Generation of documentation is disabled if software is missing. For …



@956

15 years 
Markus Ringnér 
Bug fixing



@955

15 years 
Jari Häkkinen 
Addresses #118. Removing CFLAGS variable since we are not using C directly.



@954

15 years 
Jari Häkkinen 
Addresses #118.



@953

15 years 
Jari Häkkinen 
Addresses #118.



@952

15 years 
Jari Häkkinen 
Addresses #118. Moved AC_LANG macro call to an early position.



@951

15 years 
Jari Häkkinen 
Addresses #118. Adding gsl.m4 as suggested by Peter since configure …



@950

15 years 
Peter 
SVM::make_classifier is now throwing if KernelLookup? is not passed.



@949

15 years 
Peter 
fixing bug in AveragerWeighted? so actually weights are used when …



@948

15 years 
Markus Ringnér 
Adding support and checks for intended lookups in classifiers



@947

15 years 
Peter 
removing [] in AC_INIT in command



@946

15 years 
Peter 
setting CFLAGS variable



@945

15 years 
Peter 
move down waning about missing docs program. Also fixed a typo.



@944

15 years 
Peter 
added test for presence for doxygen, latex, dvipdfm, and latex2html. …



@943

15 years 
Peter 
removing variables not needed and modified AM_INIT_AUTOMAKE to modern form



@942

15 years 
Peter 
testing that GSL version is >= 1.6



@941

15 years 
Peter 
shaping up configure.ac. Replaced AC_CHECK_LIB with AC_SEARCH_LIBS …



@940

15 years 
Peter 
fixing problem to find gsl in configure. I suspect the problem was …



@938

15 years 
Peter 
improving constness correctness



@937

15 years 
Peter 
changing name of IteratorTraits? to iterator_traits



@936

15 years 
Peter 
reimplementing yat_assert as a throwing function



@935

15 years 
Peter 
fixing doxygen problem



@934

15 years 
Peter 
fixing bug when range is one value only



@933

15 years 
Peter 
mad function now takes iterators



@932

15 years 
Peter 
median and percentile functions now take iterators rather than vectors



@931

15 years 
Markus Ringnér 
Working on ticket:259. Removed old Distance see ticket:250



@930

15 years 
Markus Ringnér 
Fixed support for MatrixLookup? in NCC. See ticket:259



@929

15 years 
Peter 
grammar



@928

15 years 
Peter 
removing some includes not needed



@927

15 years 
Peter 
modifying weighted euclidean



@926

15 years 
Markus Ringnér 
Fixing minor mistakes so things gets installed with make install



@925

15 years 
Markus Ringnér 
NCC and IGP have been changed to templates on Distance



@924

15 years 
Markus Ringnér 
See ticket:190



@923

15 years 
Jari Häkkinen 
Changed references to CVS to refer to subversion. Moved FIXME items to …



@922

15 years 
Jari Häkkinen 
Fixes #190. configure now checks for quite Nan. Check for this removed …



@921

15 years 
Jari Häkkinen 
Removed undefined macro on MacOSX. Now the yat_assert compiles.



@920

15 years 
Peter 
fixes #241



@919

15 years 
Peter 
fixes #239



@918

15 years 
Peter 
modifing tests to fit new implementation



@917

15 years 
Peter 
fixes #257



@916

15 years 
Peter 
Sorry this commit is a bit to big.
Adding a yat_assert. The yat …



@915

15 years 
Peter 
fixing dox



@914

15 years 
Peter 
refactoring add function in Averagers, refs #246



@913

15 years 
Peter 
remove stupid extra include that was added in last ci



@912

15 years 
Peter 
Made add function for AveragerPair? no longer accept weighted …



@911

15 years 
Peter 
Made add function for Averager no longer accept weighted iterators. …



@910

15 years 
Peter 
impl add function for AveragerWeighted?. The function distinguishes …



@909

15 years 
Peter 
using weighted_iterator_traits, closes #151



@908

15 years 
Peter 
adding IteratorWeighted?.h in Makefile.am (so file is included in …



@907

15 years 
Peter 
adding copyright



@906

15 years 
Peter 



@905

15 years 
Peter 
Updating NEWS file and setting mimetype to text/xtracwiki



@904

15 years 
Peter 
removing assert from header file



@903

15 years 
Markus Ringnér 
Forgot this test in the last checkin.



@902

15 years 
Markus Ringnér 
Fixing mistake in last revision (forgot to add KNN.h)



@901

15 years 
Markus Ringnér 
Added a template KNN classifier where the distance measure is the …



@900

15 years 
Markus Ringnér 
Refs #251. Fixed so the unweighted distances are at the …



@899

15 years 
Peter 
changed euclidean to fulfill design criteria, removes …



@898

15 years 
Markus Ringnér 
A first suggestion for how to adress #250. Also removed contamination …



@897

15 years 
Peter 
removing keyword that was mistakingly added before



@896

15 years 
Peter 
…



@895

15 years 
Peter 
Another try, hm…



@894

15 years 
Peter 
setting missing property Id on files



@893

15 years 
Peter 
Removing make check' output. Please obey the rule that tests are mute …



@892

15 years 
Peter 
Fixed documentation of sum_squared_deviation



@891

15 years 
Markus Ringnér 
Minor modifications



@890

15 years 
Markus Ringnér 
Refs #245 #246 #247



@889

15 years 
Markus Ringnér 
Refs #245. A new structure to calculate distances between vectors that …



@888

15 years 
Peter 
fixing doxygen parsing



@887

15 years 
Peter 
made add function template so it accepts AveragerWeighted? too. Also …



@886

15 years 
Peter 
add function for Averager and AveragerPair? taking iterators refs #246



@885

15 years 
Peter 
adding some cleaning



@884

15 years 
Peter 
some documentation



@883

15 years 
Peter 
fixing problems with iterator > const_iterator conversion



@882

15 years 
Peter 
fixing includes  sorry about that



@881

15 years 
Peter 
merged constIterator into Iterator and added an extra template …



@880

15 years 
Peter 
refs #244



@879

15 years 
Markus Ringnér 
Added support to utility::vector for gslfunctions that finds indices …



@878

15 years 
Markus Ringnér 
Problem with previous checkin fixed



@877

15 years 
Markus Ringnér 
This revision breaks the vector_test. I know this is against the rules …



@876

15 years 
Jari Häkkinen 
Added missing #include <cassert>



@875

15 years 
Peter 
rewriting SW algo, making code clearer, and perhaps removing a few bugs...?



@874

15 years 
Markus Ringnér 
Fixes ticket:237



@873

15 years 
Peter 
fixing some docs



@872

15 years 
Peter 
Some docs for TypeInfo?



@871

15 years 
Peter 
minor docs fix



@870

15 years 
Peter 
After reinstalling yat, the issue vanished, so here is the test for …



@869

15 years 
Peter 
Adding SmithWaterman local alignment and modified ssearch to use this …



@868

15 years 
Peter 
fixes ticket:236



@867

15 years 
Peter 
adding function doing a SSEARCH between two strings



@866

15 years 
Markus Ringnér 
refs #236. EnsembleBuilder::predict bug fixed for matrixbased …



@865

15 years 
Peter 
changing URL to http://trac.thep.lu.se/trac/yat


