#320 |
templatize classifier::Kernel
|
new
|
Peter
|
discussion
|
critical
|
yat 0.x+
|
#92 |
EnsembleValidator
|
new
|
Peter
|
request
|
major
|
yat 0.x+
|
#150 |
microarray::DataSet
|
new
|
Peter
|
discussion
|
major
|
yat 0.x+
|
#181 |
add a class for SAM
|
new
|
Peter
|
request
|
major
|
yat 0.x+
|
#215 |
weight information in InputRanker
|
new
|
Peter
|
enhancement
|
major
|
yat 0.x+
|
#258 |
Permutation test
|
new
|
Peter
|
enhancement
|
major
|
yat 0.x+
|
#296 |
non-random permutation test
|
new
|
Peter
|
request
|
major
|
yat 0.x+
|
#302 |
allow different normalizations in PCA
|
new
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.x+
|
#346 |
Generalize NNI to utilize different metrics
|
new
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.x+
|
#357 |
Function to calculate accuracy
|
new
|
Markus Ringnér
|
request
|
major
|
yat 0.x+
|
#364 |
Histogram cumulative distribution
|
new
|
Peter
|
enhancement
|
major
|
yat 0.x+
|
#397 |
Arithmetic for DataWeight
|
new
|
Jari Häkkinen
|
discussion
|
major
|
yat 0.x+
|
#433 |
predict in regression::Local
|
new
|
Peter
|
enhancement
|
major
|
yat 0.x+
|
#643 |
Circular Iterator Adaptor
|
new
|
Jari Häkkinen
|
request
|
major
|
yat 0.x+
|
#673 |
Chromosomes hard-wired in GenomicPosition
|
new
|
Peter
|
discussion
|
major
|
yat 0.x+
|
#711 |
speed up exact p-value for small n in Kendall
|
new
|
Peter
|
enhancement
|
major
|
yat 0.x+
|
#773 |
Weighted version of Binomial LRT
|
new
|
Peter
|
request
|
major
|
yat 0.x+
|
#774 |
iterate bam file over set of regions
|
new
|
Peter
|
discussion
|
major
|
yat 0.x+
|
#782 |
A less memory hungry Aligner
|
new
|
Peter
|
discussion
|
major
|
yat 0.x+
|
#825 |
access Option from Commandline
|
new
|
Jari Häkkinen
|
request
|
major
|
yat 0.x+
|
#835 |
Fast Matrix Transpose
|
new
|
Jari Häkkinen
|
discussion
|
major
|
yat 0.x+
|
#858 |
A proxy class between std random distributions and GSL RNG
|
reopened
|
Peter
|
discussion
|
major
|
yat 0.x+
|
#887 |
avoid copying in getvector
|
new
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.x+
|
#891 |
mutable BamReadIterator
|
new
|
Peter
|
discussion
|
major
|
yat 0.x+
|
#899 |
Scheduler::wait_for(int)
|
new
|
Jari Häkkinen
|
request
|
major
|
yat 0.x+
|
#900 |
Job creating jobs
|
new
|
Jari Häkkinen
|
request
|
major
|
yat 0.x+
|
#902 |
split SupervisedClassifer into weighted and non-weighted
|
new
|
Markus Ringnér
|
discussion
|
major
|
yat 0.x+
|
#923 |
train interpolation classes outside constructor
|
new
|
Peter
|
discussion
|
major
|
yat 0.x+
|
#973 |
normalisation with on train and validation cohort
|
new
|
Peter
|
discussion
|
major
|
yat 0.x+
|
#979 |
Inference of a mixture model of negative binomials
|
new
|
Peter
|
request
|
major
|
yat 0.20
|
#983 |
Multivariate Gaussian random distribution
|
new
|
Jari Häkkinen
|
request
|
major
|
yat 0.x+
|
#984 |
Quantile normalize a test sample based on training data
|
accepted
|
Peter
|
request
|
major
|
yat 0.20
|
#31 |
add Permutation test for weighted Score
|
new
|
Peter
|
enhancement
|
minor
|
yat 0.x+
|
#82 |
add BaseFileReader
|
new
|
Jari Häkkinen
|
request
|
minor
|
yat 0.x+
|
#139 |
Combinations of Target objects
|
new
|
Peter
|
request
|
minor
|
yat 0.x+
|
#141 |
unknown Target
|
new
|
Peter
|
request
|
minor
|
yat 0.x+
|
#231 |
read, digest, and adopt APR devel guidelines
|
new
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.x+
|
#358 |
add iterators in Kernel class
|
new
|
Peter
|
request
|
minor
|
yat 0.x+
|
#373 |
Paramaterize how to calculate the average in Quantile Normalization
|
new
|
Peter
|
enhancement
|
minor
|
yat 0.x+
|
#382 |
Create an Index object from a string in Target class
|
new
|
Peter
|
enhancement
|
minor
|
yat 0.x+
|
#401 |
Weighted Quantile Normalization
|
new
|
Peter
|
discussion
|
minor
|
yat 0.x+
|
#422 |
add(first1, last1, first2) in regression::Local
|
new
|
Peter
|
enhancement
|
minor
|
yat 0.x+
|
#428 |
yat.m4 and yat-config only work when installed
|
new
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.x+
|
#541 |
access to prediction on training data in EnsembleBuilder
|
new
|
Peter
|
request
|
minor
|
yat 0.x+
|
#552 |
calculate entropy of a histogram
|
new
|
Peter
|
request
|
minor
|
yat 0.x+
|
#690 |
AveragerPair::sum_xy_centered unstable
|
new
|
Peter
|
defect
|
minor
|
yat 0.x+
|
#732 |
use AC_CONFIG_MACRO_DIRS
|
new
|
Jari Häkkinen
|
request
|
minor
|
yat 0.x+
|
#765 |
re-implement WeightedIterator as boost:zip_iterator
|
new
|
Jari Häkkinen
|
request
|
minor
|
yat 0.x+
|
#781 |
reimplement Averagers as wrappers around boost::accumulators
|
new
|
Peter
|
discussion
|
minor
|
yat 0.x+
|
#791 |
lock ostreams
|
new
|
Peter
|
discussion
|
minor
|
yat 0.x+
|
#888 |
is it possible to call split/getvector in load functions?
|
new
|
Jari Häkkinen
|
discussion
|
minor
|
yat 0.x+
|
#912 |
confidence interval for ROC::area()
|
new
|
Peter
|
request
|
minor
|
yat 0.x+
|
#969 |
std::shared_ptr and Scheduler
|
new
|
Jari Häkkinen
|
request
|
minor
|
yat 0.x+
|
#51 |
score object using SVM
|
new
|
Peter
|
request
|
trivial
|
yat 0.x+
|
#127 |
Use Distance::Euclidean in GaussianKernelFunction
|
new
|
Peter
|
enhancement
|
trivial
|
yat 0.x+
|
#400 |
add functions taking ranges should return object that is modified
|
new
|
Peter
|
enhancement
|
trivial
|
yat 0.x+
|
#618 |
redundancy in 'required' and dependency in Makefile.am
|
new
|
Jari Häkkinen
|
enhancement
|
trivial
|
yat 0.x+
|
#805 |
installed libyat linked in before local libyat
|
new
|
Peter
|
defect
|
trivial
|
yat 0.x+
|
#812 |
include autoconf macros in doxygen docs
|
new
|
Peter
|
discussion
|
trivial
|
yat 0.x+
|
#865 |
binary_weight doesn't work with proxy value type
|
new
|
Jari Häkkinen
|
defect
|
trivial
|
yat 0.x+
|