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Ticket Summary Owner Type Priority Milestone Component
#697 attribute not updated in getline(istream&, GFF&) Peter defect major yat 0.8.1 omic
#699 YAT_SVN_RELEASE_YEAR: 'no such file or directory' warning Peter defect major yat 0.9 m4
#700 command_test fails when run as root Peter defect major yat 0.8.1 test
#703 using a non-recursive Makefile Peter discussion major yat 0.9 build
#704 throw rather than abort in assertions Peter discussion major utility
#705 kurtosis and skewness from a Histogram Peter request major yat 0.9 statistics
#706 Generalization of Needleman-Wunsch and Smith-Waterman Peter request major yat 0.9 utility
#707 Generalization of Needleman-Wunsch and Smith-Waterman Peter request major utility
#709 Averager operator+= gives incorreect mean and variance Peter defect major yat 0.8.2 statistics
#714 The thread safe rng test fails to compile on MacOS Lion Jari Häkkinen defect major yat 0.9 test
#717 svndigest utilility functions Peter request major yat 0.10 utility
#719 configure silently accepts missing boost libs Peter defect major yat 0.9 build
#721 documentation does not get installed Peter defect major yat 0.9.1 build
#722 yat.pc misses boost libs Jari Häkkinen defect major yat 0.9.1 build
#725 Functor that deletes objects Peter request major yat 0.10 utility
#726 inverse function creating map<T, size_t> Peter request major yat 0.10 utility
#729 samtools wrapper classes Peter request major yat 0.10 omic
#730 binomial random number Peter request major yat 0.10 random
#737 test [in configure] whether libs can be used to create shared libyat Peter enhancement major yat 0.11 build
#738 Functor to filter BamReads Peter request major yat 0.11 omic
#739 bam_parse_region with yat interface Peter request major yat 0.11 omic
#740 BamHeader::target_length(size_t) not implemented Peter defect major yat 0.10.1 omic
#741 MergeIterator Peter request major yat 0.11 utility
#742 add void constructors to compose functor Peter request major yat 0.11 utility
#745 Symbol not found: _bam_nt16_rev_table Peter defect major yat 0.10.2 omic
#746 non-const access to data in BamRead Peter request major yat 0.11 omic
#747 doxygen complains about yat's doxygen config file Peter enhancement major yat 0.11 documentation
#753 KolmogorovSmirnov::remove doesn't remove data Peter defect major yat 0.10.2 statistics
#754 Why is ROC::area not const? Peter request major yat 0.11 statistics
#755 tTest::score should be const Peter request major yat 0.11 statistics
#758 Symbol not found: _bam_nt16_rev_table Peter defect major build
#759 Create a macro that can test whether shared library is available Peter request major yat 0.11 m4
#760 Create a macro that can test whether static library is available Peter request major m4
#761 Create libs that can be used in tests for m4 macros Peter request major yat 0.11 test
#762 <boost/exception_ptr.hpp> in boost 1.41 problematic Peter request major yat 0.11 build
#764 BamReadIterator with invalid region Peter request major yat 0.11 omic
#766 PP #DEFINEs in global namespace Jari Häkkinen defect major yat 0.11 utility
#767 InBamFile::open should throw [not assert] when input is a wrong format Peter defect major yat 0.11 omic
#768 replace(string, string, string) is not implemented Peter defect major yat 0.10.3 utility
#769 class calculating likelihood ratio test for binomial models Peter request major yat 0.12 statistics
#770 ostream_iterator with no separator after last element Peter request major yat 0.12 utility
#775 uncompressed OutBamFile Peter request major yat 0.12 omic
#776 BamHeader::tid incorrect at first call Peter defect major yat 0.11.1 omic
#779 Behaviour of BamHeader copy constructor Peter discussion major omic
#783 convert<double>("-nan") fails Peter discussion major yat 0.12 utility
#784 BamPairIterator Peter request major yat 0.12 omic
#785 CIGAR functionality Peter request major yat 0.12 omic
#786 deprecate utility::Range Jari Häkkinen request major yat 0.13 utility
#787 configure doesn't find my ATLAS Peter defect major build
#788 yat-config --libs does not include -lgsl Peter defect major yat 0.11.2 build
#792 BamRead::flag is not implemented Peter defect major yat 0.12 omic
#796 benjamini hochberg on unsorted range Peter request major yat 0.13 statistics
#797 yat/omic/algorithm.h is missing include Peter defect major yat 0.12 omic
#798 output sorted bam buffer Peter request major yat 0.19 omic
#799 allow conversion in get(map, key) Peter enhancement major yat 0.13 utility
#800 Scheduler Peter specification major yat 0.13 utility
#803 use new iterator concepts Peter request major yat 0.14 utility
#804 remove and rename are not implemented Peter defect major yat 0.12 utility
#806 bam pileup Peter request major yat 0.13 omic
#807 Yates' correction in Fisher Peter enhancement major yat 0.13 statistics
#810 Bam::end() doesn't work when cigar contains BAM_CEQUAL and BAM_CDIFF Peter defect major yat 0.12.1 omic
#815 QuantileNormalizer segfaults if input has more columns than rows Peter defect major yat 0.12.2 normalizer
#816 create CigarIterator from Aligner::Cigar Peter request major yat 0.13 utility
#817 access misc text in BamHeader Peter request major yat 0.13 omic
#820 Unexpected CIGAR Peter defect major yat 0.12.2 utility
#823 yat_m4_with_bam_test.sh fails Peter defect major test
#830 calculate BAM's alignment score from cigar and reference Peter request major yat 0.13 omic
#832 Scheduler causes pthread_mutex_lock assertion Peter defect major yat 0.13 utility
#836 allow operator*(const Matrix&, const Matrix&) Peter request major yat 0.15 utility
#837 Geometric Distribution Jari Häkkinen request major yat 0.14 random
#838 copy k elements out of N Peter request major yat 0.14 random
#840 assignment of VectorMutable does not compile Peter defect major yat 0.14 utility
#841 Fisher's exact two-sided p-value Peter request major yat 0.14 statistics
#846 ROC::p_value() returns value greater than 1 Peter defect major yat 0.13 statistics
#848 class performing chi^2 test Peter request major yat 0.16 statistics
#849 Segment equality Jari Häkkinen request major yat 0.14 utility
#852 function to access 'samtools idxstats' stats Peter request major yat 0.14 omic
#853 compare if two file paths refers to the same file Jari Häkkinen request major utility
#856 random number from hypergeometric distribution Peter request major yat 0.14 random
#857 RNG from negative hypergeometric distribution Peter request major yat 0.14 random
#859 wrapper class around faidx_t Peter request major yat 0.14 omic
#864 change behaviour of yat-config so duplicated flag is kept Peter request major yat 0.14 build
#867 Negative Binomial Regression Peter request major yat 0.15 regression
#869 class for random number from negative binomial distribution Peter request major yat 0.18 random
#870 KernalPCA breaks with GSL 2.2 Peter defect major utility
#871 Distance base class Peter request major yat 0.14 statistics
#876 RNG::instance is not thread safe Jari Häkkinen defect major yat 0.14 random
#877 Use atomic in double checked locking pattern Peter enhancement major yat 0.15 random
#878 implement move semantics conditionally Peter discussion major yat 0.15 build
#880 transpose(A) in matrix expression Peter request major yat 0.15 utility
#881 expression class for dgemv Peter discussion major yat 0.18 utility
#882 Poissonian regression Peter request major yat 0.15 regression
#883 Base class for multivariate regression Peter request major yat 0.15 regression
#884 VectorMutable += incorrect if lhs and rhs overlap Peter defect major yat 0.14.1 utility
#885 reuse blas_result in assignment from Matrix Expression Peter enhancement major yat 0.15 utility
#886 dna_reverse_complement_copy does not work Peter defect major yat 0.14.2 omic
#889 Parameter estimation of Gaussian mixture model Peter request major yat 0.15 statistics
#892 expression class for dgemm Peter request major yat 0.18 utility
#894 BamWriteIterator default constructor is declared but not implemented Peter defect major yat 0.14.4 omic
#895 InBamFile::n_mapped(int) throws when there are no reads in chromosome Peter defect major yat 0.14.4 omic
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