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Ticket Summary Owner Type Priority Milestone Component
#896 Scheduler job processing Peter discussion major yat 0.15 utility
#897 passing VectorExpression to function taking const VectorBase& does not compile Jari Häkkinen defect major utility
#898 move assign element in Queue::pop Peter enhancement major yat 0.16 utility
#901 perceptron Markus Ringnér request major yat 0.16 classifier
#903 move function that works also in C++98 Peter discussion major yat 0.16 utility
#904 cxx11 features - default behaviour Peter request major yat 0.17 utility
#905 Support VCF (Variant Call Format) Peter request major yat 0.16 omic
#906 Constructor SVD(const Matrix&) is not declared explicit Peter defect major yat 0.16 utility
#908 Fisher::p_value incorrect Peter defect major yat 0.15.1 statistics
#909 remove references to SGI Peter defect major yat 0.16 documentation
#910 add Scheduler API to modify size (number of threads) of the scheduler Peter request major yat 0.17 utility
#913 BamPairIterator sorted wrt first read Peter request major yat 0.18 omic
#915 read and write numbers in binary format Peter request major yat 0.18 utility
#916 recycle Scheduler after wait Peter request major yat 0.17 utility
#917 undefined reference to symbol 'pthread_condattr_setclock@@GLIBC_2.3.3' Jari Häkkinen defect major build
#921 wrapper around getcwd Peter request major yat 0.17 utility
#922 configure: gsl check doesn't use detected blas Peter defect major yat 0.17 build
#924 race condition between Scheduler and Scheduler::JobHandler Peter defect major yat 0.16 utility
#928 GFF2 parser doesn't handle spaces correctly Peter defect major yat 0.16.2 omic
#929 Aligner::Cigar::begin(void) and ::end(void) are not implemented Peter defect major yat 0.16.2 utility
#931 Scheduler::jobs incorrect Peter defect major yat 0.16.3 utility
#932 squared norm of Vector Peter request major yat 0.18 utility
#933 function to remove entry in VcfHeader Peter request major yat 0.18 omic
#935 Percentiler requires ForwardIterator Peter defect major yat 0.17 test
#937 GFF2 crashes when attribute list ends with ';' Peter defect major yat 0.17 omic
#944 missing boost header <boost/random/non_central_chi_squared_distribution.hpp> Jari Häkkinen defect major test
#946 calculate Kendall::score in nlogn time Peter enhancement major statistics
#947 getvector(vector<double>&) Peter defect major yat 0.17.1 utility
#948 handle missing values (.) in VCF files Peter request major yat 0.18 omic
#951 PCA(Matrix&&) and SVD(Matrix&&) not implemented Jari Häkkinen defect major utility
#953 replace boost::thread with std::thread Peter request major yat 0.18 utility
#954 Documentation doesn't work with doxygen 1.8.19 Peter defect major yat 0.17.2 documentation
#955 incorrect Kendall's tau p-value Peter defect major yat 0.17.2 statistics
#956 Vector::resize(0) crash Peter defect major yat 0.17.2 utility
#958 Read - process - write MT pattern Peter request major yat 0.19 utility
#961 more informative exception from VCF::Data and VCF::Info Peter enhancement major yat 0.19 omic
#962 Aligner::Cigar(string) constructor Jari Häkkinen request major yat 0.19 utility
#963 Confidence interval for median (& other percentiles) Peter request major yat 0.19 statistics
#964 move constructor and assignment for DiscreteGeneral Peter request major yat 0.19 random
#965 default constructor for DiscreteGeneral Peter request major yat 0.19 random
#967 vcf_file2.test seg faults Jari Häkkinen defect major test
#970 SegmentTree compare functions do not compile Jari Häkkinen defect major yat 0.18.1 utility
#971 inverse of binomial cumulative distribution Peter request major statistics
#16 save and load SVM Peter enhancement minor yat 0.3 (Public release) classifier
#19 Averager.n() return unsigned Peter enhancement minor yat 0.3 (Public release) statistics
#20 implement WilcoxonFoldChange Peter enhancement minor yat 0.5 statistics
#22 Implement class AveragerPairWeighted Peter enhancement minor statistics
#23 redesign OnedimensionalWeighted Peter request minor yat 0.2 statistics
#25 approximative calculation of p-value in Fisher's exact test Peter enhancement minor yat 0.2 statistics
#26 throw exception in statistics::Fisher Peter request minor yat 0.2 statistics
#30 ConsensusInputRanker: move CrossSplitting Peter enhancement minor classifier
#33 reimplement ROC::score_weighted Peter enhancement minor yat 0.3 (Public release) statistics
#37 rewrite Weighted Statistics documentation Peter request minor documentation
#44 templates for median and percentile should not sort but rather require sorted objects. Peter defect minor yat 0.3 (Public release) statistics
#45 test median functions Peter request minor yat 0.3 (Public release) test
#46 median functions should be coherent Peter defect minor yat 0.3 (Public release) statistics
#49 ConsensusInputRanker.add(InputRanker) Peter enhancement minor yat 0.3 (Public release) classifier
#71 Test that output from classifier::DataLook1D can be read by gslapi::vector Markus Ringnér defect minor yat 0.3 (Public release) test
#72 Document Kernel class Peter defect minor yat 0.2 documentation
#90 rows, columns, and size functions are redundant in Kernel Peter enhancement minor yat 0.3 (Public release) classifier
#91 Parameter class Jari Häkkinen enhancement minor yat 0.3 (Public release) utility
#93 EnsembleBuilder crashes if validate() is called before build() Peter defect minor yat 0.4 classifier
#98 is_int("1.2") returns true Markus Ringnér defect minor yat 0.3 (Public release) utility
#101 separate Score functionality from heavy ammo Peter request minor yat 0.3 (Public release) classifier
#104 Why state_ in Sampler and SubsetGenerator? Markus Ringnér request minor yat 0.2 classifier
#109 weights and FeatureSelector Peter specification minor yat 0.2 classifier
#126 Euclidean distance class Peter request minor yat 0.3 (Public release) statistics
#131 MatrixLookupWeighted constructor taking ONE utility::matrix Markus Ringnér request minor yat 0.3 (Public release) classifier
#134 BootstrapSampler Peter request minor yat 0.3 (Public release) classifier
#138 utility::matrix add function could be operator+= Jari Häkkinen request minor yat 0.3 (Public release) utility
#142 Scores from the Inputranker Peter enhancement minor yat 0.3 (Public release) classifier
#143 add access to InputRankers in ConsensusInputRanker Peter enhancement minor yat 0.3 (Public release) classifier
#144 Tie in ROC Peter defect minor yat 0.8 statistics
#152 get and set state of RNG Jari Häkkinen enhancement minor yat 0.3 (Public release) random
#180 test CommandLine Peter enhancement minor yat 0.4 test
#183 Doxygen first page Peter enhancement minor yat 0.3 (Public release) documentation
#188 Use GSL defined round of errors? Jari Häkkinen enhancement minor test
#189 There are output to cerr in some library classes. Should these throw exceptions? Jari Häkkinen enhancement minor yat 0.5 regression
#191 Avoid unnecessary vector copying in kNNI and WeNNI Jari Häkkinen enhancement minor yat 0.3 (Public release) utility
#192 kNNI and WeNNI has hard coded small numbers, change to something standardized. Jari Häkkinen enhancement minor yat 0.5 utility
#194 minimize interface to matrix Jari Häkkinen enhancement minor yat 0.3 (Public release) utility
#195 minimize interface to vector Jari Häkkinen enhancement minor yat 0.3 (Public release) utility
#208 Update Requirements on wiki:start Jari Häkkinen enhancement minor yat 0.4 documentation
#211 weighted ROC p-value does not equal permutation test p-value? Peter defect minor yat 0.9 statistics
#241 Remove lost '>' on Doxygen first page Peter defect minor yat 0.4 documentation
#251 weighted_random_access_iterator_tag Peter discussion minor yat 0.4 utility
#252 value is not set properly in Iterator Peter defect minor yat 0.4 utility
#254 Document distance, euclidean_distance, ... Markus Ringnér request minor yat 0.4 documentation
#255 Our iterators should use the special std base class iterator<> Peter defect minor yat 0.4 utility
#257 matrix does not accept "-inf" Jari Häkkinen enhancement minor yat 0.4 utility
#260 DataLookup2D should have a operator<< Markus Ringnér enhancement minor yat 0.4 classifier
#262 Add section on Distance in weighted statistics document Peter request minor yat 0.4 documentation
#264 Score in InputRanker Peter enhancement minor yat 0.4 classifier
#266 what is statistics::add in utility.h doing? Peter enhancement minor statistics
#267 iterator for 2D Lookups Peter enhancement minor yat 0.4 classifier
#268 SupervisedClassifier should return void Peter enhancement minor yat 0.4 classifier
#271 NBC trains incorrectly when have total zero weight for a feature Peter defect minor yat 0.4 classifier
#272 vector_distance is not an optimal name Markus Ringnér enhancement minor yat 0.4 statistics
#273 `make doc` should run Makefile in generated latex directory Peter enhancement minor yat 0.4 build
#277 Averager clone holding more information Peter discussion minor statistics
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