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Ticket Summary Owner Type Priority Milestone Component
#213 should we remove minmax_index Jari Häkkinen request trivial yat 0.3 (Public release) utility
#446 skip documentation test rather that run it conditionally Peter enhancement trivial yat 0.5 build
#873 skip lvalue requirement in Distance concept Peter defect critical yat 0.14 utility
#748 SKIP yat_pc_test.sh when --without-samtools Peter enhancement trivial yat 0.11 test
#340 slim down SupervisedClassifer Peter request major yat 0.4 classifier
#55 smart dynamically allocated Lookups Peter enhancement trivial yat 0.2 classifier
#819 SmithWaterman::operator()(4) Peter defect minor yat 0.12.2 documentation
#359 Smooth histogram Peter request major yat 0.5 statistics
#235 SNR score objects can not be created Markus Ringnér defect major yat 0.4 statistics
#439 sort_index for iterators Peter request major yat 0.5 utility
#536 sorting range with NaNs does not behave as desired Jari Häkkinen defect major yat 0.6 utility
#366 specialize percentile (and thereby median indirectly) for weighted iterators Peter request major yat 0.5 statistics
#58 specification of file format for objects Peter request major classifier
#28 speed up CrossSplitting Peter defect major classifier
#875 speed up weighted qQuantileNormalizer::normalizer Peter enhancement minor yat 0.15 normalizer
#60 Split CrossSplitter into Sampler and SubSet Peter request major yat 0.2 classifier
#4 Split weighted and non-weighted regressors Peter enhancement major yat 0.2 statistics
#950 spurious failures in yat_pc_test.sh Peter request minor yat 0.17.2 test
#932 squared norm of Vector Peter request major yat 0.18 utility
#682 static_test.sh fails on thep system Peter defect major test
#822 static_test.sh fails when htslib installed outside runtime linker path Peter defect minor yat 0.13 test
#609 static_test.sh fails with 'CXX=c++-mp-4.3' Peter defect major yat 0.6 test
#619 static_test should be skipped when no static libyat is built Peter enhancement minor yat 0.7 test
#399 statistics::mad only works with unweighted iterators Peter defect minor yat 0.6 statistics
#623 StrideIterator<Concept2DIterator> fails boost concept check Peter defect major yat 0.7 utility
#440 StrideIterator - StrideIterator ignores the stride Peter defect critical yat 0.5 test
#132 SubsetGenerator with FeatureSelector crashes Peter defect blocker yat 0.2 classifier
#268 SupervisedClassifier should return void Peter enhancement minor yat 0.4 classifier
#318 SupervisedClassifier::train take data and target Markus Ringnér request major yat 0.4 classifier
#557 support env var VERBOSE in tests and deprecate YAT_TEST_VERBOSE Peter request trivial yat 0.6 test
#122 support feature selection in SubsetGenerator with Kernel built from MatrixLookupWeighted Peter enhancement major yat 0.2 classifier
#794 support for htslib Peter request critical yat 0.13 build
#905 Support VCF (Variant Call Format) Peter request major yat 0.16 omic
#209 svd_test uses operator|= Jari Häkkinen defect trivial yat 0.3 (Public release) test
#313 SVM constructor should be void Peter request major yat 0.4 classifier
#56 SVM convergence problem Peter request trivial yat 0.2 documentation
#314 SVM::predict should not work on DataLookup2D Markus Ringnér defect major yat 0.4 classifier
#312 SVM should not inherit from SupervisedClassifer Markus Ringnér request major yat 0.4 classifier
#86 SVM should use a MatrixLookup (and not KernelLookup) when feature selection is used. Peter enhancement major yat 0.3 (Public release) classifier
#717 svndigest utilility functions Peter request major yat 0.10 utility
#406 svn repo and trac server location moved Peter request critical yat 0.4.2 build
#745 Symbol not found: _bam_nt16_rev_table Peter defect major yat 0.10.2 omic
#758 Symbol not found: _bam_nt16_rev_table Peter defect major build
#455 take care of ties in KolmogorovSmirnov Peter enhancement trivial yat 0.5 statistics
#149 Target constructor from Target and vector<string> Peter request major yat 0.4 classifier
#972 Target::labels(void) should be const Markus Ringnér request minor yat 0.19 classifier
#94 Target.random_shuffle() Peter enhancement critical yat 0.3 (Public release) classifier
#360 template function to check if a string is convertable to a specific numerical type Peter request minor yat 0.5 utility
#44 templates for median and percentile should not sort but rather require sorted objects. Peter defect minor yat 0.3 (Public release) statistics
#311 templatize EnsembleBuilder Markus Ringnér request major yat 0.4 classifier
#309 templatize SubsetGenerator part I Peter request major yat 0.4 classifier
#633 test and docs for DataIterator requirements Peter enhancement major yat 0.7 utility
#600 test and document container type in merge Peter request minor yat 0.7 test
#597 test and document DataWeightProxy with trivial iterator Peter request minor yat 0.6 test
#585 test and document iterator type in Average Peter request minor yat 0.6 test
#586 test and document iterator type in Averager Peter defect minor yat 0.6 test
#588 test and document iterator type in AveragerPair Peter request minor yat 0.6 test
#589 test and document iterator type in AveragerPairWeighted Peter request minor yat 0.6 test
#587 test and document iterator type in AveragerWeighted Peter defect minor yat 0.6 test
#580 test and document iterator type in Centralizer Peter request minor yat 0.6 test
#581 test and document iterator type in ColumnNormalizer and RowNormalizer Peter request minor yat 0.6 test
#590 test and document iterator type in EuclideanDistance Peter request minor yat 0.6 test
#582 test and document iterator type in Gauss Peter request minor yat 0.6 test
#592 test and document iterator type in Histogram Peter request minor yat 0.6 test
#602 test and document iterator type in inverse Peter request minor yat 0.6 test
#593 test and document iterator type in KolmogorovSmirnov Peter request minor yat 0.6 test
#591 test and document iterator type in PearsonDistance Peter request minor yat 0.6 test
#584 test and document iterator type in qQuantileNormalizer Peter defect minor yat 0.6 test
#594 test and document iterator type in Smoother Peter request minor yat 0.6 test
#601 test and document iterator type in sort_index Peter request minor yat 0.6 test
#583 test and document iterator type in Spearman Peter request minor yat 0.6 test
#598 test and document iterator type in StrideIterator Peter request minor yat 0.6 test
#595 test and document iterator types in functions in statistics/utility.h Peter request minor yat 0.6 test
#634 test and document requirements for WeightedIterator Peter request major yat 0.7 test
#596 test and document types in Container2DIterator Peter request minor yat 0.7 test
#180 test CommandLine Peter enhancement minor yat 0.4 test
#223 test contain comparison of doubles with the == operator Peter defect major yat 0.4 test
#242 Test data files get installed in /usr/local/share Jari Häkkinen defect major yat 0.4 build
#668 test for yat_am_macros Peter request major yat 0.8 test
#737 test [in configure] whether libs can be used to create shared libyat Peter enhancement major yat 0.11 build
#45 test median functions Peter request minor yat 0.3 (Public release) test
#203 tests don't compile Jari Häkkinen defect blocker yat 0.3 (Public release) test
#650 tests fail with old autotools Peter defect major yat 0.8 test
#224 Test Suite Class Jari Häkkinen request major yat 0.4 test
#214 test that all input output operator work together Peter request major yat 0.5 test
#404 test that compiler flags work with compiler Jari Häkkinen defect minor yat 0.5 build
#327 test that matrix::row_view(i).begin() == matrix::begin_row(i) Peter request minor yat 0.4 test
#71 Test that output from classifier::DataLook1D can be read by gslapi::vector Markus Ringnér defect minor yat 0.3 (Public release) test
#610 test using autotools should be skipped when now recent versions of autotools are available Jari Häkkinen enhancement minor test
#771 test version number of libyat in shell tests that link against libyat Peter enhancement minor yat 0.12 test
#451 test yat.m4 Peter request major yat 0.5 test
#734 test yat.pc Peter request minor yat 0.11 test
#250 The new vector_distance structure should replace the old Distance structure. Markus Ringnér enhancement major yat 0.4 classifier
#9 theplu::statistics::regression::Local::fit (std::ostream &s, const double fraction, const u_int step_size=1) Peter defect major yat 0.2 statistics
#10 theplu::utility::read_to_double (std::istream &is, std::vector< double > &vec) Jari Häkkinen defect major yat 0.2 utility
#189 There are output to cerr in some library classes. Should these throw exceptions? Jari Häkkinen enhancement minor yat 0.5 regression
#714 The thread safe rng test fails to compile on MacOS Lion Jari Häkkinen defect major yat 0.9 test
#26 throw exception in statistics::Fisher Peter request minor yat 0.2 statistics
#778 throw OutBamFile::error from OutBamFile::write(const BamRead& read) Peter request minor yat 0.12 omic
#704 throw rather than abort in assertions Peter discussion major utility
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