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Ticket Summary Owner Type Priority Milestone Component
#581 test and document iterator type in ColumnNormalizer and RowNormalizer Peter request minor yat 0.6 test
#582 test and document iterator type in Gauss Peter request minor yat 0.6 test
#583 test and document iterator type in Spearman Peter request minor yat 0.6 test
#585 test and document iterator type in Average Peter request minor yat 0.6 test
#588 test and document iterator type in AveragerPair Peter request minor yat 0.6 test
#589 test and document iterator type in AveragerPairWeighted Peter request minor yat 0.6 test
#590 test and document iterator type in EuclideanDistance Peter request minor yat 0.6 test
#591 test and document iterator type in PearsonDistance Peter request minor yat 0.6 test
#592 test and document iterator type in Histogram Peter request minor yat 0.6 test
#593 test and document iterator type in KolmogorovSmirnov Peter request minor yat 0.6 test
#594 test and document iterator type in Smoother Peter request minor yat 0.6 test
#595 test and document iterator types in functions in statistics/utility.h Peter request minor yat 0.6 test
#596 test and document types in Container2DIterator Peter request minor yat 0.7 test
#597 test and document DataWeightProxy with trivial iterator Peter request minor yat 0.6 test
#598 test and document iterator type in StrideIterator Peter request minor yat 0.6 test
#599 document DataIterator and WeightIterator Peter request major yat 0.6 documentation
#600 test and document container type in merge Peter request minor yat 0.7 test
#601 test and document iterator type in sort_index Peter request minor yat 0.6 test
#602 test and document iterator type in inverse Peter request minor yat 0.6 test
#607 convenience function to get value from a const map& Peter request major yat 0.7 utility
#612 Comparison functor for pointers Peter request major utility
#616 cerrno exception class Peter request major yat 0.7 utility
#621 Check that Matrix and friends fulfill requirement for Forward Container Peter request minor utility
#624 add concept check class for concept DataIterator Peter request minor yat 0.7 utility
#625 add concept check class for concept Distance Peter request minor yat 0.7 utility
#626 add concept check class for concept Mutable_Container2D Peter request minor yat 0.7 utility
#627 add concept check class for concept Neighbor Weighting Method Peter request minor yat 0.7 utility
#632 PtrCompare is a special case of compose_f_gx_hy Peter request major yat 0.7 utility
#634 test and document requirements for WeightedIterator Peter request major yat 0.7 test
#639 PCA on a Kernel Matrix Peter request major yat 0.7 utility
#640 SegmentMap Peter request major yat 0.7 utility
#641 Segment MultiContainer Peter request major utility
#647 Parsing GFF files Peter request major yat 0.8 omic
#653 set functions on SegmentSet (and friends possibly) Peter request major utility
#654 allow silent-rules? Peter request minor yat 0.8 build
#655 avoid expanding variables in yat.pc Peter request minor yat 0.8 build
#656 convert numerical type to string Peter request minor yat 0.8 utility
#661 Segments are hard-coded as semi-open Jari Häkkinen request major utility
#666 Tukey biweight estimator Peter request major yat 0.8 statistics
#668 test for yat_am_macros Peter request major yat 0.8 test
#672 DNA assignment from char Peter request minor yat 0.8 omic
#679 erase elements from SegmentMap Segment Set Peter request major yat 0.8 utility
#680 mutable find function in SegmentTree Peter request major yat 0.8 utility
#686 KS for one class Peter request major yat 0.11 statistics
#688 ROC and minus 1.0 weights Peter request major yat 0.9 statistics
#689 replace one_sided_P with lower_P and upper_P Peter request major yat 0.11 statistics
#691 document when views and iterators of Vector and Matrix are invalidated Peter request major yat 0.9 documentation
#693 use gsl_blas_ddot Peter request minor yat 0.9 utility
#694 use gsl_blas_dgemv Peter request minor yat 0.9 utility
#705 kurtosis and skewness from a Histogram Peter request major yat 0.9 statistics
#706 Generalization of Needleman-Wunsch and Smith-Waterman Peter request major yat 0.9 utility
#707 Generalization of Needleman-Wunsch and Smith-Waterman Peter request major utility
#712 deprecate SmartPtr Peter request minor utility
#716 look for openblas in configure Peter request minor yat 0.11 build
#717 svndigest utilility functions Peter request major yat 0.10 utility
#718 remove convenience library Peter request minor yat 0.10 build
#725 Functor that deletes objects Peter request major yat 0.10 utility
#726 inverse function creating map<T, size_t> Peter request major yat 0.10 utility
#727 mention how manipulate GSL error handler in Doxygen docs Peter request trivial documentation
#729 samtools wrapper classes Peter request major yat 0.10 omic
#730 binomial random number Peter request major yat 0.10 random
#734 test yat.pc Peter request minor yat 0.11 test
#738 Functor to filter BamReads Peter request major yat 0.11 omic
#739 bam_parse_region with yat interface Peter request major yat 0.11 omic
#741 MergeIterator Peter request major yat 0.11 utility
#742 add void constructors to compose functor Peter request major yat 0.11 utility
#746 non-const access to data in BamRead Peter request major yat 0.11 omic
#750 update svndigest:ignore properties Peter request trivial yat 0.11 build
#751 OutBamFile::write() ignores return value from samwrite Peter request minor yat 0.11 omic
#754 Why is ROC::area not const? Peter request major yat 0.11 statistics
#755 tTest::score should be const Peter request major yat 0.11 statistics
#757 m4 macro checking that -lyat has bam support Peter request minor yat 0.11 m4
#759 Create a macro that can test whether shared library is available Peter request major yat 0.11 m4
#760 Create a macro that can test whether static library is available Peter request major m4
#761 Create libs that can be used in tests for m4 macros Peter request major yat 0.11 test
#762 <boost/exception_ptr.hpp> in boost 1.41 problematic Peter request major yat 0.11 build
#764 BamReadIterator with invalid region Peter request major yat 0.11 omic
#769 class calculating likelihood ratio test for binomial models Peter request major yat 0.12 statistics
#770 ostream_iterator with no separator after last element Peter request major yat 0.12 utility
#772 calculate mutual information Peter request minor yat 0.12 statistics
#775 uncompressed OutBamFile Peter request major yat 0.12 omic
#778 throw OutBamFile::error from OutBamFile::write(const BamRead& read) Peter request minor yat 0.12 omic
#784 BamPairIterator Peter request major yat 0.12 omic
#785 CIGAR functionality Peter request major yat 0.12 omic
#786 deprecate utility::Range Jari Häkkinen request major yat 0.13 utility
#790 workaround for BamPairIterator::operator-> Peter request minor yat 0.12 omic
#794 support for htslib Peter request critical yat 0.13 build
#795 write a test for macro YAT_HEADER_ASSERT Peter request minor yat 0.13 test
#796 benjamini hochberg on unsorted range Peter request major yat 0.13 statistics
#798 output sorted bam buffer Peter request major yat 0.19 omic
#803 use new iterator concepts Peter request major yat 0.14 utility
#806 bam pileup Peter request major yat 0.13 omic
#816 create CigarIterator from Aligner::Cigar Peter request major yat 0.13 utility
#817 access misc text in BamHeader Peter request major yat 0.13 omic
#818 SegmentSet::insert_merge(range) Peter request minor yat 0.13 utility
#821 union of a utility::Segment Peter request minor yat 0.15 utility
#826 function and/or functor to compare bam query name Peter request minor yat 0.13 omic
#828 try convert string to numeric type Peter request minor yat 0.15 utility
#830 calculate BAM's alignment score from cigar and reference Peter request major yat 0.13 omic
#831 PriorityQueue Peter request minor yat 0.13 utility
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