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Ticket Summary Owner Type Priority Milestone Component
#303 Cannot convert VectorMutable::iterator to VectorBase::const_iterator Peter defect major yat 0.4 utility
#305 matrix_test and score_test fail on linux Peter defect major yat 0.4 utility
#306 Iterators for utility::matrix Peter request major yat 0.4 utility
#309 templatize SubsetGenerator part I Peter request major yat 0.4 classifier
#310 remove DataLookup2D from SubsetGenerator Markus Ringnér request major yat 0.4 classifier
#311 templatize EnsembleBuilder Markus Ringnér request major yat 0.4 classifier
#312 SVM should not inherit from SupervisedClassifer Markus Ringnér request major yat 0.4 classifier
#313 SVM constructor should be void Peter request major yat 0.4 classifier
#314 SVM::predict should not work on DataLookup2D Markus Ringnér defect major yat 0.4 classifier
#315 Create a SmartPtr<T> class Peter request major yat 0.4 utility
#316 Create an Index class Peter request major yat 0.4 classifier
#317 Use classes Index in DataLookup2D Markus Ringnér request major yat 0.4 classifier
#318 SupervisedClassifier::train take data and target Markus Ringnér request major yat 0.4 classifier
#321 Comparison of Iterators Jari Häkkinen enhancement major yat 0.4 utility
#328 Ticket for testing svn post-commit hook Jari Häkkinen enhancement major test
#333 Remove DataLookup2D in SupervisedClassifier interface Markus Ringnér request major yat 0.4 classifier
#339 Vector: indirect self-assignment) Peter defect major yat 0.4 utility
#340 slim down SupervisedClassifer Peter request major yat 0.4 classifier
#342 remove training_data() etc from interface of Lookups Peter request major yat 0.4 classifier
#343 remove DataLookup2D Peter request major yat 0.4 classifier
#344 Commandline::parse should throw cmd_error Peter enhancement major yat 0.4 utility
#355 installation of config.h is flawed Peter defect major yat 0.5 build
#356 Documentation is not generated issuing 'make doc' Peter defect major yat 0.4.1 documentation
#359 Smooth histogram Peter request major yat 0.5 statistics
#361 Averager class does not support removal of data Jari Häkkinen enhancement major yat 0.5 statistics
#363 Weighted Mutable Matrix Peter discussion major yat 0.5 utility
#365 files doc/*.doxygen are not included in distribution Jari Häkkinen defect major yat 0.4.1 build
#366 specialize percentile (and thereby median indirectly) for weighted iterators Peter request major yat 0.5 statistics
#368 create weighted iterator from two unweighted iterators Peter request major yat 0.5 utility
#369 create unweighted iterator from weighted iterator Peter request major yat 0.5 utility
#377 class for nucleotides Peter request major yat 0.7 omic
#378 FileUtil::exists() fails on large files Jari Häkkinen defect major yat 0.4.2 utility
#381 Generalize Kernel_MEV Peter request major yat 0.12 utility
#389 failure in matrix_lookup_test Peter defect major yat 0.5 classifier
#391 return type in iterator_traits is hard-coded to double Jari Häkkinen enhancement major yat 0.5 utility
#395 Document how to implement a weighted iterator Peter enhancement major yat 0.5 documentation
#396 Interfacing MatrixWeighted with Matrix and MatrixLookupWeighted Peter request major yat 0.5 utility
#402 const conversion in StrideIterator Peter enhancement major yat 0.5 utility
#415 Merge 2D Container Peter request major yat 0.6 utility
#416 Move normalization functions/classes to a new directory Peter enhancement major yat 0.5 utility
#418 OptionArg<double> doesnt allow negative numbers Peter defect major yat 0.5 utility
#423 Local: x is not updated in fit function Peter defect major yat 0.4.2 regression
#424 Chapter 1 title in pdf file says 'Main Page' Jari Häkkinen enhancement major yat 0.5 documentation
#425 Implement qQuantile normalizer Jari Häkkinen enhancement major yat 0.5 normalizer
#426 FileUtil does not compile on Tiger Peter defect major yat 0.5 build
#429 Linear::r2(void) not implemented Peter defect major yat 0.5 regression
#434 Vector::Vector(0) crashes Peter defect major yat 0.5 utility
#436 Change license to GPL 3 Jari Häkkinen request major yat 0.5 documentation
#437 Rank Normalization Peter request major yat 0.5 normalizer
#439 sort_index for iterators Peter request major yat 0.5 utility
#444 iterators in lookups Peter request major yat 0.5 classifier
#445 All iterators with value type `DataWeight` should be weighted Peter request major yat 0.5 utility
#449 Add tests to check Concepts Peter request major yat 0.6 test
#450 pearson_p_value returns NaN when correlation is unity Peter defect major yat 0.5 statistics
#451 test yat.m4 Peter request major yat 0.5 test
#457 kolmogov_smirnov_test fails on Mac OS 10.4 Peter defect major yat 0.5 test
#458 documentation_test.sh check fails Jari Häkkinen defect major yat 0.5 test
#459 DiscreteGeneral has pointer but no declared copy constructor (or assignment operator) Jari Häkkinen defect major yat 0.5 random
#460 Fisher::oddsratio returns zero Peter defect major yat 0.4.3 statistics
#461 Fisher::p_value is incorrect Peter defect major yat 0.4.3 statistics
#463 Improve the documentation of Matrix(istream&,char) Jari Häkkinen defect major yat 0.5 documentation
#464 WeNNI does not handle NaNs well Jari Häkkinen defect major yat 0.5 utility
#466 Add interface to GSL interpolation functionality Jari Häkkinen enhancement major yat 0.5 regression
#472 extend make release target Peter request major yat 0.5 build
#474 create Vector from temporary VectorView fails Peter request major yat 0.15 utility
#476 NNI algorithms return wrong number of rows not imputed Jari Häkkinen discussion major yat 0.5 test
#488 Container2DIterator::dereference returns reference to temporary Peter defect major yat 0.5 utility
#491 allow --without in yat.m4 Peter request major yat 0.6 build
#492 documentation_test.sh check fails: doxygen \tparam command unknown? Peter defect major yat 0.5 documentation
#493 class for Spearman correlation Peter request major yat 0.9 statistics
#494 Class for Kendall's tau Peter request major yat 0.9 statistics
#496 YAT_LTLINK_IFELSE Peter request major yat 0.7 m4
#498 mixing weighted and unweighted iterators in normalizers Peter discussion major yat 0.6 normalizer
#500 yat_m4_test.sh fails under VPATH build Peter defect major yat 0.6 test
#501 doxygen should only read header files that will be installed Peter enhancement major yat 0.6 build
#503 IGP does not compile (was: add test for IGP) Peter defect major yat 0.5.2 classifier
#507 getline input iterator Peter request major yat 0.6 utility
#510 funtion creating vector<vector<T>> from istream Peter request major yat 0.6 utility
#511 linking statically against atlas fails on Fedora Jari Häkkinen defect major yat 0.6 build
#512 use doxygen tag \relates Peter request major yat 0.6 documentation
#513 Documentation of qQuantileNormalization does not clearly explain what the target is Jari Häkkinen enhancement major yat 0.5.3 documentation
#517 Improve docs on Option classes Peter request major yat 0.6 documentation
#518 choosing cblas - when and how? Jari Häkkinen discussion major yat 0.6 build
#520 A class to redirect streams easily. Peter request major yat 0.6 utility
#525 update macros in yat.m4 to reflect that libyat no longer has a dependency to a cblas lib Peter request major yat 0.6 m4
#526 configure says I have gsl installed (but too old) although I just removed it Peter defect major yat 0.6 build
#527 Cannot run configure on 64-bit CentOS Jari Häkkinen defect major yat 0.5.3 build
#528 make check fails in 0.5-stable branch Jari Häkkinen defect major yat 0.5.3 test
#529 Document important configure options Peter enhancement major yat 0.6 build
#531 creation of doxygen.mk files is not portable Peter defect major yat 0.6 build
#532 m4 files are missing in list of requirements in yat_add*test.sh Peter defect major yat 0.6 test
#533 CommandLine parse(argc, argv) gives bus error if I I have no write privileges to the result directory Peter defect major yat 0.5.3 utility
#536 sorting range with NaNs does not behave as desired Jari Häkkinen defect major yat 0.6 utility
#537 repeated make clean fails Peter defect major yat 0.6 build
#538 commandline_test fails when running as root Peter defect major yat 0.5.4 test
#542 behavior and documentation of SVM::predict are not consistent Peter defect major yat 0.5.5 classifier
#543 deprecate MatrixLookup(Matrix, Index, bool) and friends Peter discussion major yat 0.7 classifier
#548 make doc gets stuck in latex prompt Jari Häkkinen defect major yat 0.5.4 documentation
#549 ./yat_cxx_add_flag_test.sh fails Peter defect major yat 0.6 test
#550 do not hard code return type and argument types in compose_f_gx_hy Peter enhancement major yat 0.6 utility
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