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Ticket Summary Owner Type Priority Milestone Component
#644 doxygen 1.7.2 complains about YAT_DEPRECATE Peter defect minor yat 0.7 documentation
#645 cmd_error with 'prog: : invalid argument' Peter enhancement trivial yat 0.7 utility
#646 change name of tests from *_test to *.test Peter enhancement trivial yat 0.7 test
#648 compiler warnings with gcc 4.4 Peter defect minor yat 0.7.1 build
#649 compilation error with gcc 3.4 Peter defect major yat 0.7.1 build
#658 doxygen warns: 'Found \endcond command without matching \cond' Peter defect trivial yat 0.7.2 documentation
#660 median crashes on empty range Peter defect minor yat 0.7.2 statistics
#663 boostrap silence error messages Peter enhancement major yat 0.7.2 build
#664 Codon("ATG").amino_acid() returns '\0' Peter defect major yat 0.7.2 omic
#665 @PACKAGE_URL@ not replaced on thep.lu.se Peter defect major yat 0.7.3 documentation
#667 documentation missing for namespace classifier Peter defect minor yat 0.7.3 documentation
#669 ROC::p_value segmentation fault Peter defect major yat 0.7.3 statistics
#144 Tie in ROC Peter defect minor yat 0.8 statistics
#293 False Discovery Rate Peter request major yat 0.8 statistics
#392 doxygen, tests, and His ol' Grandma Jari Häkkinen discussion trivial yat 0.8 build
#620 use AC_CONFIG_HEADER to genrate yat/utility/version.h Jari Häkkinen enhancement minor yat 0.8 build
#637 Always detect `--help` option Peter enhancement major yat 0.8 utility
#647 Parsing GFF files Peter request major yat 0.8 omic
#650 tests fail with old autotools Peter defect major yat 0.8 test
#652 mention provided funtors that work with Centralizer Peter enhancement trivial yat 0.8 normalizer
#654 allow silent-rules? Peter request minor yat 0.8 build
#655 avoid expanding variables in yat.pc Peter request minor yat 0.8 build
#656 convert numerical type to string Peter request minor yat 0.8 utility
#657 make srcdir and builddir siblings in maintainer-check Peter enhancement trivial yat 0.8 m4
#659 yat_am_macros (re)create files every time autoconf is run Peter enhancement minor yat 0.8 m4
#662 create test/environment.h with AC_CONFIG_HEADERS Peter enhancement trivial yat 0.8 build
#666 Tukey biweight estimator Peter request major yat 0.8 statistics
#668 test for yat_am_macros Peter request major yat 0.8 test
#670 yat_am_macros tests fail Peter defect minor yat 0.8 test
#671 Increase accuracy in Averager Peter enhancement minor yat 0.8 statistics
#672 DNA assignment from char Peter request minor yat 0.8 omic
#674 deprecate seed functions in random base classes (Discrete Continuous)? Peter defect major yat 0.8 random
#675 document how to turn off deprecate warnings Peter enhancement minor yat 0.8 documentation
#677 When to use approximation for ROC p-value Peter defect minor yat 0.8 statistics
#678 ROC::p_value_one_sided returns small p-value for small area Peter defect major yat 0.8 statistics
#679 erase elements from SegmentMap Segment Set Peter request major yat 0.8 utility
#680 mutable find function in SegmentTree Peter request major yat 0.8 utility
#681 Missing deprecated list Peter defect minor yat 0.8 documentation
#684 compiler icpc complains about -pedantic Peter defect minor yat 0.8 build
#685 compiler warning about default argument in utility::load Peter defect major yat 0.8 utility
#687 concept_check doesn't compile with gcc3 Jari Häkkinen defect major yat 0.8 build
#695 convert<unsigned int>("-1") does not throw Peter defect major yat 0.8 utility
#697 attribute not updated in getline(istream&, GFF&) Peter defect major yat 0.8.1 omic
#698 SegmentTree docs has traces from SegmentSet Peter enhancement trivial yat 0.8.1 documentation
#700 command_test fails when run as root Peter defect major yat 0.8.1 test
#709 Averager operator+= gives incorreect mean and variance Peter defect major yat 0.8.2 statistics
#715 distcheck fails Peter defect trivial yat 0.8.2 build
#211 weighted ROC p-value does not equal permutation test p-value? Peter defect minor yat 0.9 statistics
#493 class for Spearman correlation Peter request major yat 0.9 statistics
#494 Class for Kendall's tau Peter request major yat 0.9 statistics
#568 random::RNG is not multi-thread safe Peter request major yat 0.9 random
#683 configure says no doxygen found when old doxygen is found Peter defect trivial yat 0.9 build
#688 ROC and minus 1.0 weights Peter request major yat 0.9 statistics
#691 document when views and iterators of Vector and Matrix are invalidated Peter request major yat 0.9 documentation
#693 use gsl_blas_ddot Peter request minor yat 0.9 utility
#694 use gsl_blas_dgemv Peter request minor yat 0.9 utility
#696 cache results in yat.m4 Peter enhancement trivial yat 0.9 m4
#699 YAT_SVN_RELEASE_YEAR: 'no such file or directory' warning Peter defect major yat 0.9 m4
#702 ROC::p_value crashes Peter defect minor yat 0.9 statistics
#703 using a non-recursive Makefile Peter discussion major yat 0.9 build
#705 kurtosis and skewness from a Histogram Peter request major yat 0.9 statistics
#706 Generalization of Needleman-Wunsch and Smith-Waterman Peter request major yat 0.9 utility
#713 gcc 4.0.1 complains about -pthread Peter defect trivial yat 0.9 build
#714 The thread safe rng test fails to compile on MacOS Lion Jari Häkkinen defect major yat 0.9 test
#719 configure silently accepts missing boost libs Peter defect major yat 0.9 build
#720 rng-mt failure Peter defect minor yat 0.9 random
#721 documentation does not get installed Peter defect major yat 0.9.1 build
#722 yat.pc misses boost libs Jari Häkkinen defect major yat 0.9.1 build
#723 CommandLine accepts passed '--no-foo' Peter defect minor yat 0.9.1 utility
#724 regression in NeedlemanWunsch Peter defect critical yat 0.9.1 utility
#728 documentation displays full absolute include path Peter defect trivial yat 0.9.2 documentation
#717 svndigest utilility functions Peter request major yat 0.10 utility
#718 remove convenience library Peter request minor yat 0.10 build
#725 Functor that deletes objects Peter request major yat 0.10 utility
#726 inverse function creating map<T, size_t> Peter request major yat 0.10 utility
#729 samtools wrapper classes Peter request major yat 0.10 omic
#730 binomial random number Peter request major yat 0.10 random
#731 yat_revision_header fails with Automake 1.13 Peter defect minor yat 0.10 test
#733 build failure with static libbam Peter defect critical yat 0.10.1 build
#735 missing HAVE_SAMTOOLS_BAM_H in config_public.h.in Peter defect minor yat 0.10.1 build
#736 -lbam and -lz are not mentioned in yat.pc Peter defect trivial yat 0.10.1 build
#740 BamHeader::target_length(size_t) not implemented Peter defect major yat 0.10.1 omic
#743 BamRead::mtid is not implemented Peter defect minor yat 0.10.2 omic
#745 Symbol not found: _bam_nt16_rev_table Peter defect major yat 0.10.2 omic
#749 asserts are turned on (default) Peter defect minor yat 0.10.2 build
#753 KolmogorovSmirnov::remove doesn't remove data Peter defect major yat 0.10.2 statistics
#756 yat-pc-check is not working in parallel build Peter defect trivial yat 0.10.3 build
#768 replace(string, string, string) is not implemented Peter defect major yat 0.10.3 utility
#686 KS for one class Peter request major yat 0.11 statistics
#689 replace one_sided_P with lower_P and upper_P Peter request major yat 0.11 statistics
#716 look for openblas in configure Peter request minor yat 0.11 build
#734 test yat.pc Peter request minor yat 0.11 test
#737 test [in configure] whether libs can be used to create shared libyat Peter enhancement major yat 0.11 build
#738 Functor to filter BamReads Peter request major yat 0.11 omic
#739 bam_parse_region with yat interface Peter request major yat 0.11 omic
#741 MergeIterator Peter request major yat 0.11 utility
#742 add void constructors to compose functor Peter request major yat 0.11 utility
#746 non-const access to data in BamRead Peter request major yat 0.11 omic
#747 doxygen complains about yat's doxygen config file Peter enhancement major yat 0.11 documentation
#748 SKIP yat_pc_test.sh when --without-samtools Peter enhancement trivial yat 0.11 test
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