#22 |
Implement class AveragerPairWeighted
|
Peter
|
enhancement
|
minor
|
|
statistics
|
#23 |
redesign OnedimensionalWeighted
|
Peter
|
request
|
minor
|
yat 0.2
|
statistics
|
#25 |
approximative calculation of p-value in Fisher's exact test
|
Peter
|
enhancement
|
minor
|
yat 0.2
|
statistics
|
#26 |
throw exception in statistics::Fisher
|
Peter
|
request
|
minor
|
yat 0.2
|
statistics
|
#30 |
ConsensusInputRanker: move CrossSplitting
|
Peter
|
enhancement
|
minor
|
|
classifier
|
#33 |
reimplement ROC::score_weighted
|
Peter
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
statistics
|
#37 |
rewrite Weighted Statistics documentation
|
Peter
|
request
|
minor
|
|
documentation
|
#44 |
templates for median and percentile should not sort but rather require sorted objects.
|
Peter
|
defect
|
minor
|
yat 0.3 (Public release)
|
statistics
|
#45 |
test median functions
|
Peter
|
request
|
minor
|
yat 0.3 (Public release)
|
test
|
#46 |
median functions should be coherent
|
Peter
|
defect
|
minor
|
yat 0.3 (Public release)
|
statistics
|
#49 |
ConsensusInputRanker.add(InputRanker)
|
Peter
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
classifier
|
#71 |
Test that output from classifier::DataLook1D can be read by gslapi::vector
|
Markus Ringnér
|
defect
|
minor
|
yat 0.3 (Public release)
|
test
|
#72 |
Document Kernel class
|
Peter
|
defect
|
minor
|
yat 0.2
|
documentation
|
#90 |
rows, columns, and size functions are redundant in Kernel
|
Peter
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
classifier
|
#91 |
Parameter class
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
utility
|
#93 |
EnsembleBuilder crashes if validate() is called before build()
|
Peter
|
defect
|
minor
|
yat 0.4
|
classifier
|
#98 |
is_int("1.2") returns true
|
Markus Ringnér
|
defect
|
minor
|
yat 0.3 (Public release)
|
utility
|
#101 |
separate Score functionality from heavy ammo
|
Peter
|
request
|
minor
|
yat 0.3 (Public release)
|
classifier
|
#104 |
Why state_ in Sampler and SubsetGenerator?
|
Markus Ringnér
|
request
|
minor
|
yat 0.2
|
classifier
|
#109 |
weights and FeatureSelector
|
Peter
|
specification
|
minor
|
yat 0.2
|
classifier
|
#126 |
Euclidean distance class
|
Peter
|
request
|
minor
|
yat 0.3 (Public release)
|
statistics
|
#131 |
MatrixLookupWeighted constructor taking ONE utility::matrix
|
Markus Ringnér
|
request
|
minor
|
yat 0.3 (Public release)
|
classifier
|
#134 |
BootstrapSampler
|
Peter
|
request
|
minor
|
yat 0.3 (Public release)
|
classifier
|
#138 |
utility::matrix add function could be operator+=
|
Jari Häkkinen
|
request
|
minor
|
yat 0.3 (Public release)
|
utility
|
#142 |
Scores from the Inputranker
|
Peter
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
classifier
|
#143 |
add access to InputRankers in ConsensusInputRanker
|
Peter
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
classifier
|
#144 |
Tie in ROC
|
Peter
|
defect
|
minor
|
yat 0.8
|
statistics
|
#152 |
get and set state of RNG
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
random
|
#180 |
test CommandLine
|
Peter
|
enhancement
|
minor
|
yat 0.4
|
test
|
#183 |
Doxygen first page
|
Peter
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
documentation
|
#189 |
There are output to cerr in some library classes. Should these throw exceptions?
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.5
|
regression
|
#191 |
Avoid unnecessary vector copying in kNNI and WeNNI
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
utility
|
#192 |
kNNI and WeNNI has hard coded small numbers, change to something standardized.
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.5
|
utility
|
#194 |
minimize interface to matrix
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
utility
|
#195 |
minimize interface to vector
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
utility
|
#208 |
Update Requirements on wiki:start
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.4
|
documentation
|
#211 |
weighted ROC p-value does not equal permutation test p-value?
|
Peter
|
defect
|
minor
|
yat 0.9
|
statistics
|
#241 |
Remove lost '>' on Doxygen first page
|
Peter
|
defect
|
minor
|
yat 0.4
|
documentation
|
#251 |
weighted_random_access_iterator_tag
|
Peter
|
discussion
|
minor
|
yat 0.4
|
utility
|
#252 |
value is not set properly in Iterator
|
Peter
|
defect
|
minor
|
yat 0.4
|
utility
|
#254 |
Document distance, euclidean_distance, ...
|
Markus Ringnér
|
request
|
minor
|
yat 0.4
|
documentation
|
#255 |
Our iterators should use the special std base class iterator<>
|
Peter
|
defect
|
minor
|
yat 0.4
|
utility
|
#257 |
matrix does not accept "-inf"
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.4
|
utility
|
#260 |
DataLookup2D should have a operator<<
|
Markus Ringnér
|
enhancement
|
minor
|
yat 0.4
|
classifier
|
#262 |
Add section on Distance in weighted statistics document
|
Peter
|
request
|
minor
|
yat 0.4
|
documentation
|
#264 |
Score in InputRanker
|
Peter
|
enhancement
|
minor
|
yat 0.4
|
classifier
|
#267 |
iterator for 2D Lookups
|
Peter
|
enhancement
|
minor
|
yat 0.4
|
classifier
|
#268 |
SupervisedClassifier should return void
|
Peter
|
enhancement
|
minor
|
yat 0.4
|
classifier
|
#271 |
NBC trains incorrectly when have total zero weight for a feature
|
Peter
|
defect
|
minor
|
yat 0.4
|
classifier
|
#272 |
vector_distance is not an optimal name
|
Markus Ringnér
|
enhancement
|
minor
|
yat 0.4
|
statistics
|
#273 |
`make doc` should run Makefile in generated latex directory
|
Peter
|
enhancement
|
minor
|
yat 0.4
|
build
|
#280 |
when GSL or other needed things are not found configure should fail
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.4
|
build
|
#291 |
vector::resize does not behave like std::vector
|
Peter
|
discussion
|
minor
|
yat 0.4
|
utility
|
#300 |
PCA sorts eigen vectors using N*N algo
|
Peter
|
defect
|
minor
|
yat 0.5
|
utility
|
#307 |
Change name of utility::vector to utility::Vector
|
Peter
|
request
|
minor
|
yat 0.4
|
utility
|
#308 |
Change name of utility::matrix to utility::Matrix
|
Peter
|
request
|
minor
|
yat 0.4
|
utility
|
#319 |
link to Doxygen documentation trunk version is broken
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.4
|
documentation
|
#322 |
Classes templatized on Distance should take Distance in constructor
|
Markus Ringnér
|
enhancement
|
minor
|
yat 0.4
|
classifier
|
#323 |
Where should we document concepts?
|
Markus Ringnér
|
discussion
|
minor
|
yat 0.4
|
documentation
|
#324 |
meta-function taking (un)weighted_type and return Averager (or AveragerWeighted)
|
Peter
|
request
|
minor
|
yat 0.5
|
statistics
|
#325 |
rewrite weighted statistics class in doxygen format
|
Peter
|
enhancement
|
minor
|
yat 0.4
|
documentation
|
#327 |
test that matrix::row_view(i).begin() == matrix::begin_row(i)
|
Peter
|
request
|
minor
|
yat 0.4
|
test
|
#330 |
use convert in istream constructor for Vector a Matrix
|
Peter
|
enhancement
|
minor
|
yat 0.5
|
utility
|
#331 |
differentiate "make doc"
|
Peter
|
enhancement
|
minor
|
yat 0.4
|
build
|
#335 |
training on empty classes in NCC/KNN/NBC
|
Peter
|
defect
|
minor
|
yat 0.4
|
classifier
|
#337 |
log and exp functors
|
Peter
|
defect
|
minor
|
yat 0.5
|
utility
|
#341 |
Document SubsetGenerator and EnsembleBuilder
|
Peter
|
enhancement
|
minor
|
yat 0.4
|
documentation
|
#349 |
use autoconf macro acx_blas?
|
Peter
|
enhancement
|
minor
|
yat 0.6
|
build
|
#353 |
create yat-config script
|
Peter
|
request
|
minor
|
yat 0.5
|
build
|
#360 |
template function to check if a string is convertable to a specific numerical type
|
Peter
|
request
|
minor
|
yat 0.5
|
utility
|
#362 |
run-time version check function
|
Peter
|
request
|
minor
|
yat 0.5
|
utility
|
#367 |
preprocessor guards for deprecated functions
|
Peter
|
request
|
minor
|
yat 0.5
|
build
|
#372 |
version.h is not found by doxygen (when using VPATH)
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.5
|
build
|
#375 |
send dogygen error message to a file
|
Peter
|
request
|
minor
|
yat 0.5
|
documentation
|
#376 |
configure reports flag info that may be misleading
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.5
|
build
|
#379 |
Document how output created by OptionHelp
|
Peter
|
enhancement
|
minor
|
yat 0.4.2
|
documentation
|
#380 |
Default argument in OptionArg
|
Peter
|
enhancement
|
minor
|
yat 0.5
|
utility
|
#393 |
precision is hard-coded to 12 in output operator for Matrix and friends
|
Peter
|
enhancement
|
minor
|
yat 0.6
|
utility
|
#398 |
deprecate IteratorPolicy
|
Peter
|
request
|
minor
|
yat 0.5
|
utility
|
#399 |
statistics::mad only works with unweighted iterators
|
Peter
|
defect
|
minor
|
yat 0.6
|
statistics
|
#403 |
i686-apple-darwin8-g++-4.0.1: unrecognized option '-pthread'
|
Peter
|
defect
|
minor
|
yat 0.5
|
build
|
#404 |
test that compiler flags work with compiler
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.5
|
build
|
#405 |
yat-config --cppflags return -DNDEBUG
|
Peter
|
discussion
|
minor
|
yat 0.5
|
build
|
#407 |
add tTest::reset() function
|
Peter
|
enhancement
|
minor
|
yat 0.5
|
statistics
|
#409 |
"command not found" - from make doc
|
Peter
|
enhancement
|
minor
|
yat 0.5
|
build
|
#413 |
Commandline: args must be associated with an option
|
Peter
|
enhancement
|
minor
|
yat 0.5
|
utility
|
#414 |
Commandline doesnt warn when adding two options with same name
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.5
|
utility
|
#421 |
functor check for nan
|
Peter
|
request
|
minor
|
yat 0.5
|
utility
|
#427 |
docs generation needs doxygen 1.5 or later
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.5
|
build
|
#430 |
AC_C_INLINE and -DHAVE_INLINE
|
Peter
|
enhancement
|
minor
|
yat 0.5
|
build
|
#431 |
AC_CHECK_HEADERS([unistd.h])
|
Jari Häkkinen
|
discussion
|
minor
|
yat 0.5
|
build
|
#432 |
version.h is distributed
|
Peter
|
defect
|
minor
|
yat 0.5
|
build
|
#435 |
avoid using -m64 if possible
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.6
|
build
|
#441 |
creation of yat-config and yat.pc ignores make args such as --prefix
|
Peter
|
defect
|
minor
|
yat 0.5
|
build
|
#442 |
Centralizer should handle weighted iterator
|
Peter
|
enhancement
|
minor
|
yat 0.5
|
normalizer
|
#443 |
Zscore should handle weighted iterators
|
Peter
|
enhancement
|
minor
|
yat 0.5
|
normalizer
|
#447 |
move internal stuff to sub-directory detail
|
Jari Häkkinen
|
request
|
minor
|
yat 0.5
|
utility
|
#448 |
Document Container2D concept
|
Peter
|
request
|
minor
|
yat 0.5
|
documentation
|
#452 |
analytical p-value for KS-statistics
|
Peter
|
request
|
minor
|
yat 0.5
|
statistics
|
#462 |
add sorted range to KS
|
Peter
|
request
|
minor
|
yat 0.5
|
statistics
|