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Ticket Summary Owner Type Priority Milestone Component
#562 pair_second_iterator does not compile with const_iterator Peter defect major yat 0.6 utility
#91 Parameter class Jari Häkkinen enhancement minor yat 0.3 (Public release) utility
#889 Parameter estimation of Gaussian mixture model Peter request major yat 0.15 statistics
#647 Parsing GFF files Peter request major yat 0.8 omic
#639 PCA on a Kernel Matrix Peter request major yat 0.7 utility
#300 PCA sorts eigen vectors using N*N algo Peter defect minor yat 0.5 utility
#450 pearson_p_value returns NaN when correlation is unity Peter defect major yat 0.5 statistics
#499 percentile occurs twice in doxygen output Peter defect trivial yat 0.5.2 documentation
#935 Percentiler requires ForwardIterator Peter defect major yat 0.17 test
#901 perceptron Markus Ringnér request major yat 0.16 classifier
#918 Pileup function for current read depth Peter request minor yat 0.17 omic
#411 pkg-config doesn't work because missing file boost.pc Peter defect trivial yat 0.5 build
#882 Poissonian regression Peter request major yat 0.15 regression
#161 PolynomialWeighted::standard_error Peter request major yat 0.2 regression
#204 Potentially dangerous usage of references to external objects in !ContinuousGeneral Peter defect major yat 0.3 (Public release) random
#766 PP #DEFINEs in global namespace Jari Häkkinen defect major yat 0.11 utility
#393 precision is hard-coded to 12 in output operator for Matrix and friends Peter enhancement minor yat 0.6 utility
#236 Predictions using Ensemble with feature selection does not work properly Peter defect critical yat 0.4 classifier
#966 prefer std::shared_ptr in BamReadIterator Peter enhancement minor yat 0.19 omic
#808 prefer using .private variable (when possible) in yat.pc Peter enhancement trivial yat 0.13 build
#367 preprocessor guards for deprecated functions Peter request minor yat 0.5 build
#831 PriorityQueue Peter request minor yat 0.13 utility
#927 PriorityQueue only stores unique elements Peter defect critical yat 0.16.1 utility
#777 private namespace detail is included in doxygen output Peter defect trivial yat 0.11.2 documentation
#468 propagate configure arguments to DISTCHECK_CONFIGURE_FLAGS Peter enhancement trivial yat 0.5 build
#196 Propagate version number to doxygen.config using the make system. Jari Häkkinen defect major yat 0.3 (Public release) documentation
#632 PtrCompare is a special case of compose_f_gx_hy Peter request major yat 0.7 utility
#535 qQuantileNormalization does not work with missing values represened with NaNs and weight 0 Jari Häkkinen defect critical yat 0.5.3 normalizer
#874 qQuantileNormalizer with unweighted source and weighted destination Peter request minor yat 0.15 normalizer
#288 Quantile Normalization Peter request major yat 0.5 utility
#815 QuantileNormalizer segfaults if input has more columns than rows Peter defect major yat 0.12.2 normalizer
#866 Queue and PriorityQueue should be refactored with common base class Peter enhancement trivial yat 0.16 utility
#924 race condition between Scheduler and Scheduler::JobHandler Peter defect major yat 0.16 utility
#11 random class does not accept seed!!! Jari Häkkinen defect critical yat 0.3 (Public release) random
#856 random number from hypergeometric distribution Peter request major yat 0.14 random
#568 random::RNG is not multi-thread safe Peter request major yat 0.9 random
#479 Ranger normalizers should return void Peter enhancement trivial yat 0.5 normalizer
#437 Rank Normalization Peter request major yat 0.5 normalizer
#915 read and write numbers in binary format Peter request major yat 0.18 utility
#958 Read - process - write MT pattern Peter request major yat 0.19 utility
#916 recycle Scheduler after wait Peter request major yat 0.17 utility
#299 redesign of matrix class Jari Häkkinen request critical yat 0.4 utility
#23 redesign OnedimensionalWeighted Peter request minor yat 0.2 statistics
#136 Reference counter in Kernel Peter enhancement major yat 0.3 (Public release) classifier
#724 regression in NeedlemanWunsch Peter defect critical yat 0.9.1 utility
#565 regression::MultiDimensional has implicitly declared copy and assignment Peter defect major yat 0.6 regression
#566 regression::MultiDimensionalWeighted has implicitly declared copy and assignment Peter defect major yat 0.6 regression
#957 regression::NegativeBinomial should inherit from regression::Multivariate Peter defect trivial yat 0.18 regression
#33 reimplement ROC::score_weighted Peter enhancement minor yat 0.3 (Public release) statistics
#220 Release 0.3 does not compile on SuSE 10.1!!! Jari Häkkinen defect blocker yat 0.3.1 build
#804 remove and rename are not implemented Peter defect major yat 0.12 utility
#371 remove ax_prefix_config_h.m4 Peter request trivial yat 0.5 build
#63 remove constructor gslapi::vector(DataLookup1D&) Jari Häkkinen defect major yat 0.3 (Public release) gslapi
#718 remove convenience library Peter request minor yat 0.10 build
#343 remove DataLookup2D Peter request major yat 0.4 classifier
#310 remove DataLookup2D from SubsetGenerator Markus Ringnér request major yat 0.4 classifier
#333 Remove DataLookup2D in SupervisedClassifier interface Markus Ringnér request major yat 0.4 classifier
#504 remove default value for second argument 'msg' in yat_assert Peter request minor yat 0.6 utility
#114 remove feature selection stuff from NCC Peter defect major yat 0.2 classifier
#113 remove feature selection stuff from SupervisedClassifier Peter defect major yat 0.2 classifier
#115 remove feature selection stuff from SVM Peter defect major yat 0.2 classifier
#241 Remove lost '>' on Doxygen first page Peter defect minor yat 0.4 documentation
#909 remove references to SGI Peter defect major yat 0.16 documentation
#146 remove selected() in Kernel - use make_kernel() instead Peter enhancement major yat 0.2 classifier
#939 remove support for libbam Peter request critical yat 0.18 build
#117 remove temporary interface in InputRanker with two MatrixLookup Peter defect major yat 0.2 classifier
#342 remove training_data() etc from interface of Lookups Peter request major yat 0.4 classifier
#120 remove weights in SubsetGenerator Peter defect major yat 0.2 classifier
#329 rename struct weighted_type to weighted_tag Peter enhancement trivial yat 0.4 utility
#537 repeated make clean fails Peter defect major yat 0.6 build
#953 replace boost::thread with std::thread Peter request major yat 0.18 utility
#87 replace cumulative hypergeometric with GSL implementation Peter request trivial yat 0.5 statistics
#689 replace one_sided_P with lower_P and upper_P Peter request major yat 0.11 statistics
#768 replace(string, string, string) is not implemented Peter defect major yat 0.10.3 utility
#949 require c++11 compiler Peter request blocker yat 0.18 build
#945 require GSL 1.13 Peter request trivial yat 0.18 utility
#554 rescaling Histogram Peter request major yat 0.6 statistics
#205 resize matrix Peter enhancement critical yat 0.3 (Public release) utility
#334 return Derived* from make_classifier not SupervisedClassifier Markus Ringnér enhancement trivial yat 0.4 classifier
#391 return type in iterator_traits is hard-coded to double Jari Häkkinen enhancement major yat 0.5 utility
#177 return variance rather than std in regression Peter defect major yat 0.2 regression
#885 reuse blas_result in assignment from Matrix Expression Peter enhancement major yat 0.15 utility
#6 Rework theplu::statistics::AveragerWeighted Peter request major statistics
#64 re-write score functions and Averagers taking vectors Peter enhancement major yat 0.4 statistics
#325 rewrite weighted statistics class in doxygen format Peter enhancement minor yat 0.4 documentation
#37 rewrite Weighted Statistics documentation Peter request minor documentation
#857 RNG from negative hypergeometric distribution Peter request major yat 0.14 random
#876 RNG::instance is not thread safe Jari Häkkinen defect major yat 0.14 random
#228 RNG is not Singleton Jari Häkkinen defect major yat 0.4 build
#720 rng-mt failure Peter defect minor yat 0.9 random
#907 RNG::seed_from_devurandom is not exception safe Peter defect trivial yat 0.16 random
#688 ROC and minus 1.0 weights Peter request major yat 0.9 statistics
#702 ROC::p_value crashes Peter defect minor yat 0.9 statistics
#678 ROC::p_value_one_sided returns small p-value for small area Peter defect major yat 0.8 statistics
#846 ROC::p_value() returns value greater than 1 Peter defect major yat 0.13 statistics
#669 ROC::p_value segmentation fault Peter defect major yat 0.7.3 statistics
#847 ROC p_value; when is exact method used Peter defect minor yat 0.13 documentation
#90 rows, columns, and size functions are redundant in Kernel Peter enhancement minor yat 0.3 (Public release) classifier
#362 run-time version check function Peter request minor yat 0.5 utility
#968 rvalue insert in SegmentTree Peter request minor yat 0.19 utility
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