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Ticket Summary Owner Type Priority Milestone Component
#522 yat-config should honor environment variable YAT_CBLAS_LIB Peter request minor yat 0.6 build
#523 add support for option --libs-without-cblas in yat-config Peter request minor yat 0.6 build
#524 add configure option --with-cblas in yat's configure Peter request minor yat 0.6 build
#540 EnsembleBuilder::validate triggers assert when EB is built with one class having zero number of samples Peter defect minor yat 0.6 classifier
#545 doc claims median only works with unweighted iterators Peter defect minor yat 0.5.4 documentation
#551 alpha_var() and beta_var() in regression::Linear claims to return standard deviation Peter defect minor yat 0.6 documentation
#556 make Histogram output complete - allow construction of an object from the output Peter enhancement minor yat 0.7 statistics
#564 gcc complains about long long when compiling against Boost 1.40 Peter defect minor yat 0.5.5 build
#572 GCC 4.3 complains about deprecated conversion from string constant to char* Peter defect minor yat 0.6 test
#580 test and document iterator type in Centralizer Peter request minor yat 0.6 test
#581 test and document iterator type in ColumnNormalizer and RowNormalizer Peter request minor yat 0.6 test
#582 test and document iterator type in Gauss Peter request minor yat 0.6 test
#583 test and document iterator type in Spearman Peter request minor yat 0.6 test
#584 test and document iterator type in qQuantileNormalizer Peter defect minor yat 0.6 test
#585 test and document iterator type in Average Peter request minor yat 0.6 test
#586 test and document iterator type in Averager Peter defect minor yat 0.6 test
#587 test and document iterator type in AveragerWeighted Peter defect minor yat 0.6 test
#588 test and document iterator type in AveragerPair Peter request minor yat 0.6 test
#589 test and document iterator type in AveragerPairWeighted Peter request minor yat 0.6 test
#590 test and document iterator type in EuclideanDistance Peter request minor yat 0.6 test
#591 test and document iterator type in PearsonDistance Peter request minor yat 0.6 test
#592 test and document iterator type in Histogram Peter request minor yat 0.6 test
#593 test and document iterator type in KolmogorovSmirnov Peter request minor yat 0.6 test
#594 test and document iterator type in Smoother Peter request minor yat 0.6 test
#595 test and document iterator types in functions in statistics/utility.h Peter request minor yat 0.6 test
#596 test and document types in Container2DIterator Peter request minor yat 0.7 test
#597 test and document DataWeightProxy with trivial iterator Peter request minor yat 0.6 test
#598 test and document iterator type in StrideIterator Peter request minor yat 0.6 test
#600 test and document container type in merge Peter request minor yat 0.7 test
#601 test and document iterator type in sort_index Peter request minor yat 0.6 test
#602 test and document iterator type in inverse Peter request minor yat 0.6 test
#617 FileUtil::permission bug when file (in root dir) does not exist Peter defect minor yat 0.6.1 utility
#619 static_test should be skipped when no static libyat is built Peter enhancement minor yat 0.7 test
#620 use AC_CONFIG_HEADER to genrate yat/utility/version.h Jari Häkkinen enhancement minor yat 0.8 build
#624 add concept check class for concept DataIterator Peter request minor yat 0.7 utility
#625 add concept check class for concept Distance Peter request minor yat 0.7 utility
#626 add concept check class for concept Mutable_Container2D Peter request minor yat 0.7 utility
#627 add concept check class for concept Neighbor Weighting Method Peter request minor yat 0.7 utility
#628 doxygen shows private class (in CommandLine) Peter defect minor yat 0.7 documentation
#629 yat::random classes should comply with STL's concept Random Number Generator Peter enhancement minor yat 0.7 random
#644 doxygen 1.7.2 complains about YAT_DEPRECATE Peter defect minor yat 0.7 documentation
#648 compiler warnings with gcc 4.4 Peter defect minor yat 0.7.1 build
#654 allow silent-rules? Peter request minor yat 0.8 build
#655 avoid expanding variables in yat.pc Peter request minor yat 0.8 build
#656 convert numerical type to string Peter request minor yat 0.8 utility
#659 yat_am_macros (re)create files every time autoconf is run Peter enhancement minor yat 0.8 m4
#660 median crashes on empty range Peter defect minor yat 0.7.2 statistics
#667 documentation missing for namespace classifier Peter defect minor yat 0.7.3 documentation
#670 yat_am_macros tests fail Peter defect minor yat 0.8 test
#671 Increase accuracy in Averager Peter enhancement minor yat 0.8 statistics
#672 DNA assignment from char Peter request minor yat 0.8 omic
#675 document how to turn off deprecate warnings Peter enhancement minor yat 0.8 documentation
#677 When to use approximation for ROC p-value Peter defect minor yat 0.8 statistics
#681 Missing deprecated list Peter defect minor yat 0.8 documentation
#684 compiler icpc complains about -pedantic Peter defect minor yat 0.8 build
#693 use gsl_blas_ddot Peter request minor yat 0.9 utility
#694 use gsl_blas_dgemv Peter request minor yat 0.9 utility
#702 ROC::p_value crashes Peter defect minor yat 0.9 statistics
#716 look for openblas in configure Peter request minor yat 0.11 build
#718 remove convenience library Peter request minor yat 0.10 build
#720 rng-mt failure Peter defect minor yat 0.9 random
#723 CommandLine accepts passed '--no-foo' Peter defect minor yat 0.9.1 utility
#731 yat_revision_header fails with Automake 1.13 Peter defect minor yat 0.10 test
#734 test yat.pc Peter request minor yat 0.11 test
#735 missing HAVE_SAMTOOLS_BAM_H in config_public.h.in Peter defect minor yat 0.10.1 build
#743 BamRead::mtid is not implemented Peter defect minor yat 0.10.2 omic
#749 asserts are turned on (default) Peter defect minor yat 0.10.2 build
#751 OutBamFile::write() ignores return value from samwrite Peter request minor yat 0.11 omic
#752 avoid installing header files conditionally Peter enhancement minor yat 0.11 omic
#757 m4 macro checking that -lyat has bam support Peter request minor yat 0.11 m4
#771 test version number of libyat in shell tests that link against libyat Peter enhancement minor yat 0.12 test
#772 calculate mutual information Peter request minor yat 0.12 statistics
#778 throw OutBamFile::error from OutBamFile::write(const BamRead& read) Peter request minor yat 0.12 omic
#780 Aligner vertical and horizon gap Peter enhancement minor yat 0.12 documentation
#790 workaround for BamPairIterator::operator-> Peter request minor yat 0.12 omic
#795 write a test for macro YAT_HEADER_ASSERT Peter request minor yat 0.13 test
#802 AveragerWeighted::n(void) returns NaN for empty object Peter specification minor yat 0.13 statistics
#814 IGP: avoid calculating distance between every pair Peter enhancement minor yat 0.13 classifier
#818 SegmentSet::insert_merge(range) Peter request minor yat 0.13 utility
#819 SmithWaterman::operator()(4) Peter defect minor yat 0.12.2 documentation
#821 union of a utility::Segment Peter request minor yat 0.15 utility
#822 static_test.sh fails when htslib installed outside runtime linker path Peter defect minor yat 0.13 test
#826 function and/or functor to compare bam query name Peter request minor yat 0.13 omic
#827 set unset and flip bits in BamRead::flag Peter discussion minor yat 0.16 omic
#828 try convert string to numeric type Peter request minor yat 0.15 utility
#831 PriorityQueue Peter request minor yat 0.13 utility
#834 make_segment for utility::Segment Peter request minor yat 0.15 utility
#839 Cannot find atlas on CentOS7 Peter defect minor yat 0.14 build
#842 functor to compare pairs wrt to first only (ignore second) Peter request minor yat 0.14 utility
#847 ROC p_value; when is exact method used Peter defect minor yat 0.13 documentation
#850 yat.pc should use htslib.pc Jari Häkkinen defect minor yat 0.13.1 build
#855 OutBamFile constructor segfaults if header is a NULL header Peter enhancement minor yat 0.14 omic
#862 samtools sort fails with samtools 1.2 and older Jari Häkkinen defect minor yat 0.13.1 test
#868 calculate inverse of (square) matrix Peter request minor yat 0.15 utility
#872 move test class weighted_iterator_archetype to namespace utility. Peter request minor yat 0.14 utility
#874 qQuantileNormalizer with unweighted source and weighted destination Peter request minor yat 0.15 normalizer
#875 speed up weighted qQuantileNormalizer::normalizer Peter enhancement minor yat 0.15 normalizer
#890 normalize to unity Peter request minor yat 0.18 normalizer
#911 allow multiple arguments to yat-config Peter request minor yat 0.17 build
#918 Pileup function for current read depth Peter request minor yat 0.17 omic
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