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Ticket Summary Owner Type Priority Milestone Component
#470 avoid using test::Suite::equal when comparing with value from file Peter defect minor yat 0.5 test
#473 disallow assignment of interpolation claases Peter request minor yat 0.5 regression
#475 upgrade to automake 1.11 Peter request minor yat 0.7 build
#478 Generalize qQuantileNormalizer to work also on weighted data Peter discussion minor yat 0.5 normalizer
#480 missing operator- for DataIterator Peter defect minor yat 0.5 utility
#484 install-hook in build_support does not work on mac Jari Häkkinen defect minor yat 0.5 build
#485 yat-config --cppflags returns `-DGSL_RANGE_CHECK_OFF` and `-DNDEBUG` Peter defect minor yat 0.5 build
#502 clarify what KolmogorovSmirnov::signed_score returns Peter enhancement minor yat 0.5.2 documentation
#504 remove default value for second argument 'msg' in yat_assert Peter request minor yat 0.6 utility
#505 avoid polluting commandline with -I/usr/include and -L/usr/lib Peter enhancement minor yat 0.6 build
#506 change 'SVM::max_epochs' to be unsigned Peter defect minor yat 0.6 classifier
#508 Commandline throws exception without message Peter defect minor yat 0.5.2 utility
#514 concept: Weighted Iterator or unweighted with value type convertible to double. Peter request minor yat 0.6 documentation
#522 yat-config should honor environment variable YAT_CBLAS_LIB Peter request minor yat 0.6 build
#523 add support for option --libs-without-cblas in yat-config Peter request minor yat 0.6 build
#524 add configure option --with-cblas in yat's configure Peter request minor yat 0.6 build
#540 EnsembleBuilder::validate triggers assert when EB is built with one class having zero number of samples Peter defect minor yat 0.6 classifier
#545 doc claims median only works with unweighted iterators Peter defect minor yat 0.5.4 documentation
#551 alpha_var() and beta_var() in regression::Linear claims to return standard deviation Peter defect minor yat 0.6 documentation
#556 make Histogram output complete - allow construction of an object from the output Peter enhancement minor yat 0.7 statistics
#564 gcc complains about long long when compiling against Boost 1.40 Peter defect minor yat 0.5.5 build
#572 GCC 4.3 complains about deprecated conversion from string constant to char* Peter defect minor yat 0.6 test
#580 test and document iterator type in Centralizer Peter request minor yat 0.6 test
#581 test and document iterator type in ColumnNormalizer and RowNormalizer Peter request minor yat 0.6 test
#582 test and document iterator type in Gauss Peter request minor yat 0.6 test
#583 test and document iterator type in Spearman Peter request minor yat 0.6 test
#584 test and document iterator type in qQuantileNormalizer Peter defect minor yat 0.6 test
#585 test and document iterator type in Average Peter request minor yat 0.6 test
#586 test and document iterator type in Averager Peter defect minor yat 0.6 test
#587 test and document iterator type in AveragerWeighted Peter defect minor yat 0.6 test
#588 test and document iterator type in AveragerPair Peter request minor yat 0.6 test
#589 test and document iterator type in AveragerPairWeighted Peter request minor yat 0.6 test
#590 test and document iterator type in EuclideanDistance Peter request minor yat 0.6 test
#591 test and document iterator type in PearsonDistance Peter request minor yat 0.6 test
#592 test and document iterator type in Histogram Peter request minor yat 0.6 test
#593 test and document iterator type in KolmogorovSmirnov Peter request minor yat 0.6 test
#594 test and document iterator type in Smoother Peter request minor yat 0.6 test
#595 test and document iterator types in functions in statistics/utility.h Peter request minor yat 0.6 test
#596 test and document types in Container2DIterator Peter request minor yat 0.7 test
#597 test and document DataWeightProxy with trivial iterator Peter request minor yat 0.6 test
#598 test and document iterator type in StrideIterator Peter request minor yat 0.6 test
#600 test and document container type in merge Peter request minor yat 0.7 test
#601 test and document iterator type in sort_index Peter request minor yat 0.6 test
#602 test and document iterator type in inverse Peter request minor yat 0.6 test
#617 FileUtil::permission bug when file (in root dir) does not exist Peter defect minor yat 0.6.1 utility
#619 static_test should be skipped when no static libyat is built Peter enhancement minor yat 0.7 test
#620 use AC_CONFIG_HEADER to genrate yat/utility/version.h Jari Häkkinen enhancement minor yat 0.8 build
#624 add concept check class for concept DataIterator Peter request minor yat 0.7 utility
#625 add concept check class for concept Distance Peter request minor yat 0.7 utility
#626 add concept check class for concept Mutable_Container2D Peter request minor yat 0.7 utility
#627 add concept check class for concept Neighbor Weighting Method Peter request minor yat 0.7 utility
#628 doxygen shows private class (in CommandLine) Peter defect minor yat 0.7 documentation
#629 yat::random classes should comply with STL's concept Random Number Generator Peter enhancement minor yat 0.7 random
#644 doxygen 1.7.2 complains about YAT_DEPRECATE Peter defect minor yat 0.7 documentation
#648 compiler warnings with gcc 4.4 Peter defect minor yat 0.7.1 build
#654 allow silent-rules? Peter request minor yat 0.8 build
#655 avoid expanding variables in yat.pc Peter request minor yat 0.8 build
#656 convert numerical type to string Peter request minor yat 0.8 utility
#659 yat_am_macros (re)create files every time autoconf is run Peter enhancement minor yat 0.8 m4
#660 median crashes on empty range Peter defect minor yat 0.7.2 statistics
#667 documentation missing for namespace classifier Peter defect minor yat 0.7.3 documentation
#670 yat_am_macros tests fail Peter defect minor yat 0.8 test
#671 Increase accuracy in Averager Peter enhancement minor yat 0.8 statistics
#672 DNA assignment from char Peter request minor yat 0.8 omic
#675 document how to turn off deprecate warnings Peter enhancement minor yat 0.8 documentation
#677 When to use approximation for ROC p-value Peter defect minor yat 0.8 statistics
#681 Missing deprecated list Peter defect minor yat 0.8 documentation
#684 compiler icpc complains about -pedantic Peter defect minor yat 0.8 build
#693 use gsl_blas_ddot Peter request minor yat 0.9 utility
#694 use gsl_blas_dgemv Peter request minor yat 0.9 utility
#702 ROC::p_value crashes Peter defect minor yat 0.9 statistics
#716 look for openblas in configure Peter request minor yat 0.11 build
#718 remove convenience library Peter request minor yat 0.10 build
#720 rng-mt failure Peter defect minor yat 0.9 random
#723 CommandLine accepts passed '--no-foo' Peter defect minor yat 0.9.1 utility
#731 yat_revision_header fails with Automake 1.13 Peter defect minor yat 0.10 test
#734 test yat.pc Peter request minor yat 0.11 test
#735 missing HAVE_SAMTOOLS_BAM_H in config_public.h.in Peter defect minor yat 0.10.1 build
#743 BamRead::mtid is not implemented Peter defect minor yat 0.10.2 omic
#749 asserts are turned on (default) Peter defect minor yat 0.10.2 build
#751 OutBamFile::write() ignores return value from samwrite Peter request minor yat 0.11 omic
#752 avoid installing header files conditionally Peter enhancement minor yat 0.11 omic
#757 m4 macro checking that -lyat has bam support Peter request minor yat 0.11 m4
#771 test version number of libyat in shell tests that link against libyat Peter enhancement minor yat 0.12 test
#772 calculate mutual information Peter request minor yat 0.12 statistics
#778 throw OutBamFile::error from OutBamFile::write(const BamRead& read) Peter request minor yat 0.12 omic
#780 Aligner vertical and horizon gap Peter enhancement minor yat 0.12 documentation
#790 workaround for BamPairIterator::operator-> Peter request minor yat 0.12 omic
#795 write a test for macro YAT_HEADER_ASSERT Peter request minor yat 0.13 test
#802 AveragerWeighted::n(void) returns NaN for empty object Peter specification minor yat 0.13 statistics
#814 IGP: avoid calculating distance between every pair Peter enhancement minor yat 0.13 classifier
#818 SegmentSet::insert_merge(range) Peter request minor yat 0.13 utility
#819 SmithWaterman::operator()(4) Peter defect minor yat 0.12.2 documentation
#821 union of a utility::Segment Peter request minor yat 0.15 utility
#822 static_test.sh fails when htslib installed outside runtime linker path Peter defect minor yat 0.13 test
#824 OptionVersion class Peter request minor yat 0.20 utility
#826 function and/or functor to compare bam query name Peter request minor yat 0.13 omic
#827 set unset and flip bits in BamRead::flag Peter discussion minor yat 0.16 omic
#828 try convert string to numeric type Peter request minor yat 0.15 utility
#831 PriorityQueue Peter request minor yat 0.13 utility
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