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Ticket Summary Owner Type Priority Milestone Component
#483 install yat_add_flag.m4 Peter request trivial yat 0.5 build
#489 Check template requirements Peter request critical yat 0.7 test
#491 allow --without in yat.m4 Peter request major yat 0.6 build
#493 class for Spearman correlation Peter request major yat 0.9 statistics
#494 Class for Kendall's tau Peter request major yat 0.9 statistics
#496 YAT_LTLINK_IFELSE Peter request major yat 0.7 m4
#504 remove default value for second argument 'msg' in yat_assert Peter request minor yat 0.6 utility
#507 getline input iterator Peter request major yat 0.6 utility
#510 funtion creating vector<vector<T>> from istream Peter request major yat 0.6 utility
#512 use doxygen tag \relates Peter request major yat 0.6 documentation
#514 concept: Weighted Iterator or unweighted with value type convertible to double. Peter request minor yat 0.6 documentation
#517 Improve docs on Option classes Peter request major yat 0.6 documentation
#520 A class to redirect streams easily. Peter request major yat 0.6 utility
#521 deprecate OptionInFile and OptionOutFile Peter request trivial yat 0.6 utility
#522 yat-config should honor environment variable YAT_CBLAS_LIB Peter request minor yat 0.6 build
#523 add support for option --libs-without-cblas in yat-config Peter request minor yat 0.6 build
#524 add configure option --with-cblas in yat's configure Peter request minor yat 0.6 build
#525 update macros in yat.m4 to reflect that libyat no longer has a dependency to a cblas lib Peter request major yat 0.6 m4
#530 add version output of doxygen in documentation_test.sh Peter request trivial yat 0.6 test
#544 allow --without-boost, --without-gsl and --without-blas Peter request trivial yat 0.6 build
#554 rescaling Histogram Peter request major yat 0.6 statistics
#557 support env var VERBOSE in tests and deprecate YAT_TEST_VERBOSE Peter request trivial yat 0.6 test
#568 random::RNG is not multi-thread safe Peter request major yat 0.9 random
#571 several constructors in random.h are not declared explicit Peter request major yat 0.6 random
#575 assignment of FileUtil Peter request major yat 0.6 utility
#577 convert files to UTF-8 Jari Häkkinen request major yat 0.6 test
#580 test and document iterator type in Centralizer Peter request minor yat 0.6 test
#581 test and document iterator type in ColumnNormalizer and RowNormalizer Peter request minor yat 0.6 test
#582 test and document iterator type in Gauss Peter request minor yat 0.6 test
#583 test and document iterator type in Spearman Peter request minor yat 0.6 test
#585 test and document iterator type in Average Peter request minor yat 0.6 test
#588 test and document iterator type in AveragerPair Peter request minor yat 0.6 test
#589 test and document iterator type in AveragerPairWeighted Peter request minor yat 0.6 test
#590 test and document iterator type in EuclideanDistance Peter request minor yat 0.6 test
#591 test and document iterator type in PearsonDistance Peter request minor yat 0.6 test
#592 test and document iterator type in Histogram Peter request minor yat 0.6 test
#593 test and document iterator type in KolmogorovSmirnov Peter request minor yat 0.6 test
#594 test and document iterator type in Smoother Peter request minor yat 0.6 test
#595 test and document iterator types in functions in statistics/utility.h Peter request minor yat 0.6 test
#596 test and document types in Container2DIterator Peter request minor yat 0.7 test
#597 test and document DataWeightProxy with trivial iterator Peter request minor yat 0.6 test
#598 test and document iterator type in StrideIterator Peter request minor yat 0.6 test
#599 document DataIterator and WeightIterator Peter request major yat 0.6 documentation
#600 test and document container type in merge Peter request minor yat 0.7 test
#601 test and document iterator type in sort_index Peter request minor yat 0.6 test
#602 test and document iterator type in inverse Peter request minor yat 0.6 test
#607 convenience function to get value from a const map& Peter request major yat 0.7 utility
#612 Comparison functor for pointers Peter request major utility
#616 cerrno exception class Peter request major yat 0.7 utility
#624 add concept check class for concept DataIterator Peter request minor yat 0.7 utility
#625 add concept check class for concept Distance Peter request minor yat 0.7 utility
#626 add concept check class for concept Mutable_Container2D Peter request minor yat 0.7 utility
#627 add concept check class for concept Neighbor Weighting Method Peter request minor yat 0.7 utility
#632 PtrCompare is a special case of compose_f_gx_hy Peter request major yat 0.7 utility
#634 test and document requirements for WeightedIterator Peter request major yat 0.7 test
#639 PCA on a Kernel Matrix Peter request major yat 0.7 utility
#640 SegmentMap Peter request major yat 0.7 utility
#647 Parsing GFF files Peter request major yat 0.8 omic
#654 allow silent-rules? Peter request minor yat 0.8 build
#655 avoid expanding variables in yat.pc Peter request minor yat 0.8 build
#656 convert numerical type to string Peter request minor yat 0.8 utility
#666 Tukey biweight estimator Peter request major yat 0.8 statistics
#668 test for yat_am_macros Peter request major yat 0.8 test
#672 DNA assignment from char Peter request minor yat 0.8 omic
#679 erase elements from SegmentMap Segment Set Peter request major yat 0.8 utility
#680 mutable find function in SegmentTree Peter request major yat 0.8 utility
#686 KS for one class Peter request major yat 0.11 statistics
#688 ROC and minus 1.0 weights Peter request major yat 0.9 statistics
#689 replace one_sided_P with lower_P and upper_P Peter request major yat 0.11 statistics
#691 document when views and iterators of Vector and Matrix are invalidated Peter request major yat 0.9 documentation
#693 use gsl_blas_ddot Peter request minor yat 0.9 utility
#694 use gsl_blas_dgemv Peter request minor yat 0.9 utility
#705 kurtosis and skewness from a Histogram Peter request major yat 0.9 statistics
#706 Generalization of Needleman-Wunsch and Smith-Waterman Peter request major yat 0.9 utility
#716 look for openblas in configure Peter request minor yat 0.11 build
#717 svndigest utilility functions Peter request major yat 0.10 utility
#718 remove convenience library Peter request minor yat 0.10 build
#725 Functor that deletes objects Peter request major yat 0.10 utility
#726 inverse function creating map<T, size_t> Peter request major yat 0.10 utility
#729 samtools wrapper classes Peter request major yat 0.10 omic
#730 binomial random number Peter request major yat 0.10 random
#734 test yat.pc Peter request minor yat 0.11 test
#738 Functor to filter BamReads Peter request major yat 0.11 omic
#739 bam_parse_region with yat interface Peter request major yat 0.11 omic
#741 MergeIterator Peter request major yat 0.11 utility
#742 add void constructors to compose functor Peter request major yat 0.11 utility
#746 non-const access to data in BamRead Peter request major yat 0.11 omic
#750 update svndigest:ignore properties Peter request trivial yat 0.11 build
#751 OutBamFile::write() ignores return value from samwrite Peter request minor yat 0.11 omic
#754 Why is ROC::area not const? Peter request major yat 0.11 statistics
#755 tTest::score should be const Peter request major yat 0.11 statistics
#757 m4 macro checking that -lyat has bam support Peter request minor yat 0.11 m4
#759 Create a macro that can test whether shared library is available Peter request major yat 0.11 m4
#761 Create libs that can be used in tests for m4 macros Peter request major yat 0.11 test
#762 <boost/exception_ptr.hpp> in boost 1.41 problematic Peter request major yat 0.11 build
#764 BamReadIterator with invalid region Peter request major yat 0.11 omic
#769 class calculating likelihood ratio test for binomial models Peter request major yat 0.12 statistics
#770 ostream_iterator with no separator after last element Peter request major yat 0.12 utility
#772 calculate mutual information Peter request minor yat 0.12 statistics
#775 uncompressed OutBamFile Peter request major yat 0.12 omic
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