#3 |
Restrict access to vector and matrix internal GSL stuff
|
Jari Häkkinen
|
enhancement
|
major
|
|
gslapi
|
#13 |
Go through SMO code in SVM.train
|
Peter
|
request
|
major
|
|
classifier
|
#54 |
CrossSplitter of type Matrix from CrossSplitter of type Kernel
|
Peter
|
enhancement
|
major
|
yat 0.3 (Public release)
|
classifier
|
#58 |
specification of file format for objects
|
Peter
|
request
|
major
|
|
classifier
|
#67 |
Implement 'make doc+stat+publish' properly.
|
Jari Häkkinen
|
request
|
major
|
yat 0.2
|
documentation
|
#69 |
Overhaul of trac and doxygen documentation
|
Markus Ringnér
|
defect
|
major
|
yat 0.2
|
documentation
|
#86 |
SVM should use a MatrixLookup (and not KernelLookup) when feature selection is used.
|
Peter
|
enhancement
|
major
|
yat 0.3 (Public release)
|
classifier
|
#105 |
remove asserts in header files
|
Peter
|
defect
|
major
|
yat 0.3 (Public release)
|
classifier
|
#169 |
Use MTL for Vector and Matrix
|
Jari Häkkinen
|
discussion
|
major
|
|
utility
|
#187 |
Add a compiler flag to remove checks for GSL errors?
|
|
enhancement
|
major
|
|
build
|
#210 |
Distance should take DataLookupWeighted1D
|
Peter
|
enhancement
|
major
|
yat 0.4
|
statistics
|
#248 |
avoid using GSL sort algo in vector::sort
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.4
|
utility
|
#284 |
hide your members
|
Markus Ringnér
|
request
|
major
|
|
classifier
|
#301 |
NCC - how to calculate the centroid
|
Markus Ringnér
|
discussion
|
major
|
|
classifier
|
#332 |
configure does not find my ATLAS
|
Jari Häkkinen
|
enhancement
|
major
|
|
build
|
#347 |
#includes: "yat/utility/utility.h" or "../utility/utility.h"
|
Peter
|
discussion
|
major
|
|
build
|
#495 |
`make uninstall` removes installed files but not directories
|
Jari Häkkinen
|
discussion
|
major
|
|
build
|
#515 |
Why isn't theplu::yat::utility::Index a derived class of std::vector<size_t>?
|
Jari Häkkinen
|
discussion
|
major
|
|
utility
|
#641 |
Segment MultiContainer
|
Peter
|
request
|
major
|
|
utility
|
#653 |
set functions on SegmentSet (and friends possibly)
|
Peter
|
request
|
major
|
|
utility
|
#661 |
Segments are hard-coded as semi-open
|
Jari Häkkinen
|
request
|
major
|
|
utility
|
#692 |
matrix.test + 3 friends crash when linked against libmkl
|
Peter
|
defect
|
major
|
|
utility
|
#704 |
throw rather than abort in assertions
|
Peter
|
discussion
|
major
|
|
utility
|
#758 |
Symbol not found: _bam_nt16_rev_table
|
Peter
|
defect
|
major
|
|
build
|
#760 |
Create a macro that can test whether static library is available
|
Peter
|
request
|
major
|
|
m4
|
#779 |
Behaviour of BamHeader copy constructor
|
Peter
|
discussion
|
major
|
|
omic
|
#853 |
compare if two file paths refers to the same file
|
Jari Häkkinen
|
request
|
major
|
|
utility
|
#854 |
avoid using non-standard sys/stat.h
|
Peter
|
discussion
|
major
|
|
utility
|
#897 |
passing VectorExpression to function taking const VectorBase& does not compile
|
Jari Häkkinen
|
defect
|
major
|
|
utility
|
#948 |
handle missing values (.) in VCF files
|
Peter
|
request
|
major
|
yat 0.18
|
omic
|
#951 |
PCA(Matrix&&) and SVD(Matrix&&) not implemented
|
Jari Häkkinen
|
defect
|
major
|
|
utility
|
#967 |
vcf_file2.test seg faults
|
Jari Häkkinen
|
defect
|
major
|
|
test
|
#971 |
inverse of binomial cumulative distribution
|
Peter
|
request
|
major
|
|
statistics
|
#16 |
save and load SVM
|
Peter
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
classifier
|
#188 |
Use GSL defined round of errors?
|
Jari Häkkinen
|
enhancement
|
minor
|
|
test
|
#277 |
Averager clone holding more information
|
Peter
|
discussion
|
minor
|
|
statistics
|
#336 |
avoid including installed yat
|
Jari Häkkinen
|
enhancement
|
minor
|
|
build
|
#350 |
function to calculate t-score-pvalue from t-score and dof
|
Peter
|
enhancement
|
minor
|
yat 0.5
|
statistics
|
#351 |
Estimating parameter p (and confidence interval) in binomial distribution
|
Peter
|
request
|
minor
|
|
statistics
|
#453 |
avoid self-assignment of weights in 1D-normalizers
|
Peter
|
enhancement
|
minor
|
|
normalizer
|
#621 |
Check that Matrix and friends fulfill requirement for Forward Container
|
Peter
|
request
|
minor
|
|
utility
|
#701 |
avoid release merge conflicts
|
Peter
|
discussion
|
minor
|
|
build
|
#712 |
deprecate SmartPtr
|
Peter
|
request
|
minor
|
|
utility
|
#829 |
compiler warning: comma at end of enumerator list
|
Jari Häkkinen
|
defect
|
minor
|
|
build
|
#843 |
Binomial Confidence Interval
|
Peter
|
request
|
minor
|
|
statistics
|
#959 |
utility::Dereferencer doesn't work with smart pointers
|
Jari Häkkinen
|
discussion
|
minor
|
|
utility
|
#32 |
add sensitivity to SVM
|
Peter
|
enhancement
|
trivial
|
|
classifier
|
#34 |
implement << for std::vector
|
Jari Häkkinen
|
enhancement
|
trivial
|
yat 0.3 (Public release)
|
utility
|
#55 |
smart dynamically allocated Lookups
|
Peter
|
enhancement
|
trivial
|
yat 0.2
|
classifier
|
#85 |
Forward declaration of string (check Scotts advise)
|
Jari Häkkinen
|
defect
|
trivial
|
yat 0.3 (Public release)
|
utility
|
#121 |
garbage_ in FeatureSelector should it be there?
|
Peter
|
request
|
trivial
|
yat 0.2
|
classifier
|
#199 |
NNI should use Euclidean
|
Markus Ringnér
|
enhancement
|
trivial
|
yat 0.4
|
classifier
|
#385 |
AX_PATH_GSL fails if gslcblas is not available
|
Jari Häkkinen
|
defect
|
trivial
|
yat 0.6
|
build
|
#419 |
./configure: line 3353: echo: write error: Broken pipe
|
Peter
|
defect
|
trivial
|
|
build
|
#477 |
compiler do optimize in --enable-debug mode
|
Jari Häkkinen
|
discussion
|
trivial
|
|
build
|
#727 |
mention how manipulate GSL error handler in Doxygen docs
|
Peter
|
request
|
trivial
|
|
documentation
|
#801 |
non-standard functions
|
Jari Häkkinen
|
defect
|
trivial
|
|
utility
|