Opened 17 years ago

Last modified 15 years ago

#150 new discussion

microarray::DataSet

Reported by: Peter Owned by: Peter
Priority: major Milestone: yat 0.x+
Component: classifier Version:
Keywords: Cc:

Description (last modified by Peter)

See also #82 #415

Could contain:

  • a class Probe(set)Info giving information about thingies (gensymbol, unigene cluster, ...)
  • a map<string, MatrixLookup?> where string could be int1, int2, ratio...
  • a map<string, vector> holding information about samples.

Features:

  • create a MatrixLookupWeighted? from say logratios and snr (in a WeNNI manner). I don't think it's possible to create a MatrixLookupWeighted? from two MatrixLookups? at the time being. I guess that would need some friendship..?
  • create a subDataSet from a DataSet? and a vector of either probe_id (e.g. only probes from chromosome 10) or a vector of Target info (e.g. ER_status == POS)
  • merge dataset on probe thingie (e.g. unigene cluster). When it comes to weighted merging talk to PE about merging of weights, but simplest would be to just add up weights.

Change History (7)

comment:1 Changed 17 years ago by Jari Häkkinen

Type: idea → request

Removing type "idea" and changing this to a "request".

comment:2 Changed 17 years ago by Peter

Type: request → specification

comment:3 Changed 17 years ago by Peter

The ​Rosetta model have a discussion on estimation of the error (or weights) after merging on e.g. UniGene cluster.

comment:4 Changed 17 years ago by Jari Häkkinen

Milestone: → later

comment:5 Changed 17 years ago by Jari Häkkinen

Description: modified (diff)

comment:6 Changed 17 years ago by Jari Häkkinen

Type: specification → discussion

comment:7 Changed 15 years ago by Peter

Description: modified (diff)

ticket:415 was marked as related

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