Opened 11 years ago

Closed 10 years ago

#647 closed request (fixed)

Parsing GFF files

Reported by: Peter Owned by: Peter
Priority: major Milestone: yat 0.8
Component: omic Version: trunk
Keywords: Cc:

Description

A class parsing the a line in a GFF file. I have need for both version 2 and version 3, so I'd like support for both.

Specs: http://www.sanger.ac.uk/resources/software/gff/spec.html

http://www.sequenceontology.org/gff3.shtml

Change History (4)

comment:1 Changed 11 years ago by Peter

I'm thinking an interface similar to GetlineIterator, i.e., we implement it as an input_iterator. The istream constructor reads the header in which it e.g. is defined which version that is used. The ++operator reads next line and operator* returns a reference to a GFF object.

comment:2 Changed 11 years ago by Peter

Status: newassigned

comment:3 Changed 11 years ago by Peter

(In [2450]) test gff3 file. refs #647

comment:4 Changed 10 years ago by Peter

Resolution: fixed
Status: assignedclosed

(In [2482]) new class GFF. closes #647

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