Opened 4 years ago
Closed 3 years ago
#913 closed request (fixed)
BamPairIterator sorted wrt first read
Reported by: | Peter | Owned by: | Peter |
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Priority: | major | Milestone: | yat 0.18 |
Component: | omic | Version: | |
Keywords: | Cc: |
Description
BamPairIterator? iterates over read pairs such that sorted with respect to the second read. Here, instead we want the same thing but sorted with respect to the first read.
It's dangerous in the general case as iterator has to store virtually everything between current ::first and ::second (its mate), so if read pairs with large \c isize are included this is not feasible (in contrast to the current BamPairIterator)
Change History (2)
comment:1 Changed 3 years ago by
Milestone: | yat 0.x+ → yat 0.18 |
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Status: | new → accepted |
comment:2 Changed 3 years ago by
Resolution: | → fixed |
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Status: | accepted → closed |
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