Opened 4 years ago

Closed 4 years ago

#928 closed defect (fixed)

GFF2 parser doesn't handle spaces correctly

Reported by: Peter Owned by: Peter
Priority: major Milestone: yat 0.16.2
Component: omic Version: 0.16
Keywords: Cc:

Description

If there is a space after the semicolon like before 'gene_name' here 

gene_id "ENSG00000223972"; gene_name "DDX11L1"

the GFF2 parser doesn't parse the elements correctly as it splits on spaces and thus thinks the attribute key is empty string.

Change History (3)

comment:1 Changed 4 years ago by Peter

In 3834:

test bug #928 (refs #928).

comment:2 Changed 4 years ago by Peter

Component: utility → omic
Owner: changed from Jari Häkkinen to Peter
Status: new → accepted

comment:3 Changed 4 years ago by Peter

Resolution: → fixed
Status: accepted → closed

In 3836:

fixes #928

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