Timeline
Dec 19, 2005:
- 9:30 PM Changeset [471] by
- fixed ROC
- 8:46 PM Changeset [470] by
- compiling 3 tests fail
- 3:58 PM Changeset [469] by
- non compiling checking before revision after design meeting
Dec 18, 2005:
- 10:49 PM Ticket #16 (save and load SVM) closed by
- wontfix
- 10:47 PM Ticket #32 (add sensitivity to SVM) created by
- Given a training the SVM should be able to tell what inputs are …
Dec 17, 2005:
- 5:53 AM Ticket #31 (add Permutation test for weighted Score) created by
- Add this function in base class taking target, value, weight, and …
- 2:15 AM Changeset [468] by
- made gslapi::vector inherit from VectorAbstract?
- 1:59 AM Changeset [467] by
- added VectorView? and VectorAbstract?
- 1:07 AM Changeset [466] by
- Creating a private branch
- 12:19 AM Changeset [465] by
- implemented score for WilcoxonFoldChange?
Dec 16, 2005:
- 11:15 PM Changeset [464] by
- made median template
- 10:19 PM Ticket #30 (ConsensusInputRanker: move CrossSplitting ) created by
- CrossSplitting? should be created outside and sent in to the object. …
- 7:13 PM Ticket #29 (NaN in weighted statistics and Score) created by
- In all the weighted functionality a value x is accompanied by a weight …
- 6:59 PM Changeset [463] by
- fixed bug in KernelView? constructor and updated tests
- 6:02 PM Changeset [462] by
- changed link to svnstat plot to my place
- 4:34 PM Changeset [461] by
- ?
- 1:40 PM Changeset [460] by
- changed name of class
- 1:38 PM Changeset [459] by
- only one class per line in Makefile.am
- 1:20 PM Changeset [458] by
- namespace svm changed to classifier
- 1:20 PM Changeset [457] by
- 1:19 PM Changeset [456] by
- Updated to use DataViews?
- 1:19 PM Changeset [455] by
- Adding classes to support general views of matrices (and kernels). …
- 12:31 PM Ticket #28 (speed up CrossSplitting) created by
- Redesigned the whole thing
- 11:43 AM Changeset [454] by
- Added class for Nearest Centroid Classifier
Dec 15, 2005:
- 10:49 PM Changeset [453] by
- changed namespace svm to classifier in test
- 10:32 PM Changeset [452] by
- it should compile now
- 10:09 PM Changeset [451] by
- directory svm -> classifier
- 9:59 PM Changeset [450] by
- starting to move namespace svm, it wont work compiling for a while, …
- 9:11 PM Ticket #15 (Copy constructor for SVM) closed by
- fixed: Done. some member variables are copied shallow, so the constructor …
- 9:08 PM Ticket #25 (approximative calculation of p-value in Fisher's exact test) closed by
- fixed: Default is to use the approximation when all elements are at least 10.
- 9:06 PM Changeset [449] by
- added approximative p-value calculation using Chi2, fixed some bugs, …
- 9:03 PM Ticket #27 (Create Classifier::Ensemble) created by
- 8:05 PM Changeset [448] by
- oops, at least compiling now
- 7:51 PM Changeset [447] by
- added copy constructor for KernelView? and added construction of …
- 7:20 PM Ticket #26 (throw exception in statistics::Fisher) created by
- 6:16 PM Ticket #12 (Implement copy constructor for SVM::KernelView) closed by
- fixed: Not really coherent with vector, but a copy of a view is just a copy …
- 6:11 PM Changeset [446] by
- added copy constructor for KernelView? and added construction of …
- 5:52 PM Changeset [445] by
- added reset function and copy constructor to SVM
- 5:20 PM Changeset [444] by
- cosmetic change of printout
- 4:28 PM Changeset [443] by
- Added missing virtual destructors.
- 3:17 PM Changeset [442] by
- Added include of needed header files.
- 3:14 PM Changeset [441] by
- Added include of cassert
- 3:11 PM Changeset [440] by
- Added include of cassert
- 2:43 PM Ticket #14 (add reset function to SVM) closed by
- fixed: Done! sets alpha_ to Zero and trained_=false
- 1:46 PM Changeset [439] by
- Fixed istream parsing when separator is last on line: a trailing NaN …
- 10:10 AM Changeset [438] by
- Fixed the test for checking for unexpected characters in vector …
- 9:32 AM Changeset [437] by
- Minor style fixes.
- 12:28 AM Changeset [436] by
- Added support for NaN:s in read_to_int and read_to_double. Added …
- 12:25 AM Changeset [435] by
- Changed to using stringstreams when checking types for strings
- 12:23 AM Changeset [434] by
- Modified istream constructors to support both the old format and CSV …
Dec 14, 2005:
- 7:54 PM Ticket #24 (Averager classes should have constructors taking gslapi::vectors) closed by
- fixed: implemented (by MR) as a function (add).
- 5:13 PM Ticket #25 (approximative calculation of p-value in Fisher's exact test) created by
- use Chi2 approximation. interface in line with ROC class how to change …
Dec 13, 2005:
- 3:51 PM Changeset [433] by
- Added member function to add all values in a gsl vector
- 3:49 PM Changeset [432] by
- Added operator<< for pairs
- 3:48 PM Changeset [431] by
- Added sort elements member function
Dec 12, 2005:
Dec 9, 2005:
- 12:07 AM Ticket #23 (redesign OnedimensionalWeighted) created by
- redesign Regression::OnedimensionalWeighted? and its daughters. …
Dec 8, 2005:
- 11:53 PM Ticket #9 (theplu::statistics::regression::Local::fit (std::ostream &s, const ...) closed by
- fixed
- 11:53 PM Changeset [430] by
- changed interface of Regression::Local
- 8:51 PM Ticket #4 (Split weighted and non-weighted regressors) closed by
- fixed
- 8:50 PM Changeset [429] by
- separating weighted and non-weighted regression to different classes.
- 6:11 PM Ticket #22 (Implement class AveragerPairWeighted) created by
- Functions should fulfill the following: 1) all weights equal to unity …
- 5:20 PM Changeset [428] by
- improved doc in Score
- 4:47 PM Ticket #19 (Averager.n() return unsigned ) closed by
- fixed
- 4:46 PM Changeset [427] by
- modified Averagers so their size in unsigned
- 1:07 PM Ticket #21 (General view for vector and matrix) created by
- In GSL views are only supported for limited cases. A general view …
Dec 7, 2005:
- 7:59 PM Ticket #20 (implement WilcoxonFoldChange) created by
- At time being the non-weighted score is implemented in the naive way …
- 3:39 PM Changeset [426] by
- Removed obsolete branch (merged into trunk).
- 3:19 PM Ticket #11 (random class does not accept seed!!!) closed by
- fixed: The underlying rng had already support for setting seed. Added support …
- 3:14 PM Changeset [425] by
- Fixed bug in DiscreteUniform?. Added seeding support for classes …
- 3:09 PM WikiStart edited by
- (diff)
- 11:01 AM Changeset [424] by
- Fixed documentation and moved around code.
Dec 6, 2005:
- 6:44 PM Ticket #19 (Averager.n() return unsigned ) created by
- number of data points is never negative, so the function should return …
Dec 2, 2005:
- 3:42 PM Changeset [423] by
- Fixed gnuplot to generate png.
- 12:39 PM Changeset [422] by
- Fixed statistics script. png generation must be fixed.
- 1:30 AM Ticket #18 (const vector matrix::operator*(const vector&) const) created by
- Non-sense implementation is currently implemented. Remove it or fix it.
- 1:28 AM Changeset [421] by
- Created non-sense matrix*vector operator.
- 1:15 AM Changeset [420] by
- Merged better_matrix_class changes r402:419 into the trunk.
- 12:52 AM Changeset [419] by
- Added more matrix tests.
- 12:52 AM Changeset [418] by
- Made output from matrix and vector coherrent.
- 12:05 AM Ticket #5 (Does this view work properly) closed by
- fixed
- 12:00 AM Ticket #17 (constness of views do not work ... or do they?) created by
- In test/matrix_test.cc there is a test that examines what happens when …
Dec 1, 2005:
- 11:20 PM Changeset [417] by
- Fixed delete bug in matrix dextructor, added more matrix tests.
- 9:54 PM Changeset [416] by
- Made knni_matrix.data file somewhat irregular.
- 4:52 PM Changeset [415] by
- Removed some gslapi copy intensive operators. Made gslapi assignment …
- 4:42 PM Ticket #3 (Restrict access to vector and matrix internal GSL stuff) closed by
- wontfix: Access to the internal GSL structures must be allowed since other …
- 4:38 PM Ticket #16 (save and load SVM) created by
- Define format how to save an trained SVM with corresponding kernel and data
- 4:35 PM Ticket #15 (Copy constructor for SVM) created by
- 4:33 PM Ticket #14 (add reset function to SVM) created by
- sets all alpha to zero and makes SVM untrained
- 4:31 PM Ticket #13 (Go through SMO code in SVM.train) created by
- Look for and remove unwanted copying, a general speed up
- 4:25 PM Ticket #12 (Implement copy constructor for SVM::KernelView) created by
- Should it be a view or a reel copy? Be coherent with vector view
- 4:17 PM Changeset [414] by
- adding FoldChange? class and fixing bugs in Score classes
Nov 30, 2005:
- 10:35 PM Changeset [413] by
- All check passes, but more matrix checks needed.
- 6:58 PM Changeset [412] by
- fixing bug with window in both ends
- 5:20 PM Changeset [411] by
- Move todo items to trac.
- 5:06 PM Ticket #11 (random class does not accept seed!!!) created by
- The same seed is always used!
- 5:02 PM Ticket #10 (theplu::utility::read_to_double (std::istream &is, std::vector< double ...) created by
- Change the implementation of this function to follow C/C++ style …
- 3:11 PM Changeset [410] by
- removed p-value from Score baseclass interface
- 12:08 PM Ticket #9 (theplu::statistics::regression::Local::fit (std::ostream &s, const ...) created by
- Change interface. Make class contain pointers to the regressors.
- 12:01 PM Ticket #8 (Member theplu::random::DiscreteUniform::DiscreteUniform (const u_long n)) created by
- Exception should be thrown, when n is out of range. This applies for …
- 11:54 AM Ticket #7 (Document theplu::utility::IO_error) created by
- 11:49 AM Ticket #6 (Rework theplu::statistics::AveragerWeighted) created by
- Check the implementation. Add link to peters stats_weighted.tex …
- 11:40 AM Ticket #5 (Does this view work properly) created by
- Check what happens with const gslapi::vector get_eigenvector( …
- 11:38 AM Ticket #4 (Split weighted and non-weighted regressors) created by
- Vi var ju inte nöjda med regression interfacet. Till den diskussionen …
Nov 28, 2005:
- 1:15 AM Changeset [409] by
- More view fixing.
- 12:40 AM Changeset [408] by
- Continued fixing with views related to matrix.
Nov 27, 2005:
- 11:40 PM Changeset [407] by
- Added documentation. Started with view implementation.
- 11:39 PM Changeset [406] by
- Polished code and documentation, removed inclusion of nonused header files.
- 11:35 PM Changeset [405] by
- Minor change to IO_error exception.
- 1:31 AM Changeset [404] by
- gslapi compiles, but matrix.cc not complete.
- 1:26 AM Changeset [403] by
- Updated matrix class, but matrix view not considered yet.
Nov 26, 2005:
- 10:16 PM Ticket #3 (Restrict access to vector and matrix internal GSL stuff) created by
- Maybe the gslapi interface should be changed so that internal GSL …
- 9:54 PM Ticket #2 (Add exceptions to gsl usage) created by
- The error conditions of underlying GSL calls should be reported back …
- 4:04 PM Changeset [402] by
- Created branch for fixing of the matrix class.
Nov 25, 2005:
- 7:37 PM Ticket #1 (Checking of write permissions to files in FileIO does not work) created by
- A call like FileIO().access_rights("filename","w") will complain about …
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