Timeline



Mar 15, 2006:

6:23 PM Ticket #55 (smart dynamically allocated Lookups) created by Peter
For the time being there are a number of functions generating …
5:28 PM Changeset [564] by Peter
weight MatrixLookup? from a KernelLookup?
3:59 PM Ticket #54 (CrossSplitter of type Matrix from CrossSplitter of type Kernel) created by Peter
It would be useful to have a CrossSplitter? constructor that creates a …
3:45 PM Ticket #27 (Create Classifier::Ensemble) closed by Peter
fixed: done
3:44 PM Ticket #13 (Go through SMO code in SVM.train) closed by Peter
wontfix: There is nothing onvious glue code, hence nothing will be fixed.
10:20 AM Changeset [563] by Jari Häkkinen
Added copyright statement.
10:19 AM Changeset [562] by Jari Häkkinen
Corrected copyright statement.
10:14 AM Changeset [561] by Jari Häkkinen
Fixed documentation, added copyright statement.

Mar 13, 2006:

4:42 PM Ticket #53 (Constructor gslapi::vector(void)) created by Peter
See also #42 In void constructor (also in matrix class) all internal …
3:36 PM Changeset [560] by Markus Ringnér
Minor fixes plus fixed bug in ConsensusInputRanker?

Mar 11, 2006:

11:21 PM Changeset [559] by Peter
some changes in EB

Mar 10, 2006:

4:58 PM Changeset [558] by Peter
ConsensusInputRanker? now supports weights
4:39 PM Ticket #40 (Feature selection interaction with sampler) closed by Peter
fixed

Mar 9, 2006:

9:38 AM Changeset [557] by Peter
fixed bug in Averager::variance

Mar 8, 2006:

2:09 PM Changeset [556] by Peter
correcting assignment operators
9:48 AM Changeset [555] by Peter
inserted private operator=

Mar 7, 2006:

3:22 PM Changeset [554] by Markus Ringnér
added small test
2:53 PM Changeset [553] by Peter
added range check in KernelLookup? Constructor and clarified doc in …
2:52 PM Changeset [552] by Peter
killed bug in SVM
2:39 PM Changeset [551] by Markus Ringnér
Added tests of two nested CrossSplitters? to crossvalidation_test
11:58 AM Changeset [550] by Peter
removed assert from matrix.h
10:43 AM Changeset [549] by Peter
forgot to add file

Mar 6, 2006:

7:00 PM Changeset [548] by Peter
fixed bug in Kernels
3:48 PM Changeset [547] by Peter
deleting dynamically allocated kernels in SVM destructor
3:48 PM Changeset [546] by Peter
inlined function
2:35 PM Changeset [545] by Peter
added feature selection for SVM

Mar 5, 2006:

6:33 PM Changeset [544] by Peter
corrected SVM::make_classifier
5:42 PM Changeset [543] by Peter
moved destruction of ranker to SupervisedClassifier?
4:49 PM Ticket #48 (implement SVM::predict) closed by Peter
fixed: Done.
4:46 PM Changeset [542] by Peter
added predict function in SVM supporting weight
4:22 PM Ticket #36 (add weights to CrossSplitter) closed by Peter
fixed: Done. When a weight matrix is not given in constructor weights with …
4:20 PM Changeset [541] by Peter
weights supported in CrossSplitter?
4:02 PM Changeset [540] by Peter
added weights in CrossSplitter? - not supported in interface though.
2:44 PM Ticket #52 (Nan*0 treatment in GaussianKernelFunction) closed by Peter
fixed: Fixed. Data values with zero weight are ignored.
2:33 PM Changeset [539] by Peter
re-introduced prediction in SVM
10:52 AM Changeset [538] by Peter
corrected test for KernelLookup?
10:30 AM Changeset [537] by Peter
forked tests and fixed bugs

Mar 3, 2006:

10:19 PM Changeset [536] by Peter
fixed problem with ConsensusInputranker? - Now all tests do pass
4:15 PM Changeset [535] by Peter
changed minor stupid stuff in gslapi
12:27 PM Changeset [534] by Peter
bug fixes in MatrixLookup? and extended test
11:29 AM Changeset [533] by Peter
test for MatrixLookup?. NOTE: consensus_inputranker_test still fails

Mar 2, 2006:

6:44 PM Changeset [532] by Peter
modified implementation of Parson weighted - now in line with other …
6:35 PM Changeset [531] by Markus Ringnér
Note there are some problem when creating MatrixLookups? from …

Mar 1, 2006:

3:11 PM Changeset [530] by Markus Ringnér
Fixed problems for empty target groups
3:03 PM Changeset [529] by Markus Ringnér
Added score for signal-to-noise ratio (Golub score). Fixed …
2:28 PM Changeset [528] by Peter
adding source files that were forgotten
12:23 PM Changeset [527] by Peter
Modified Kernel to be built from MatrixLookup? rather than …
9:49 AM Changeset [526] by Markus Ringnér
Fixed bug in tScore and in MatrixLookup?. Added support for scoring …

Feb 24, 2006:

5:29 PM Changeset [525] by Markus Ringnér
Added structure to Supervised classifier and NCC to support ranking …

Feb 23, 2006:

4:55 PM Changeset [524] by Peter
fixed bug PolynimialKernelFunction? - can now handle NaNs? with weights
4:54 PM Ticket #52 (Nan*0 treatment in GaussianKernelFunction) created by Peter
In the weighted version a weight of zero should always be ignored and …
2:27 PM Ticket #51 (score object using SVM) created by Peter
By training an SVM and calculating the feature sensitivity one can …
2:23 PM Ticket #50 (implement matrix.binary_weight(void)) closed by Peter
fixed: Done. Is implemented as matrix nan(void). Should perhaps be a void …
2:21 PM Ticket #49 (ConsensusInputRanker.add(InputRanker)) closed by Peter
fixed
9:52 AM Changeset [523] by Peter
add prediction functions to SVM
9:46 AM Changeset [522] by Peter
added function to add InputRanker? to ConsensusInputRanker?

Feb 22, 2006:

4:41 PM Changeset [521] by Peter
extended target and ensemble tests
4:01 PM Changeset [520] by Peter
changed internal representation in Target
10:28 AM Changeset [519] by Peter
percentile is now called percentile

Feb 21, 2006:

6:32 PM Changeset [518] by Peter
also adding the test for EnsembleBuilder?
5:35 PM Changeset [517] by Peter
fixed bug in DataLookup2D and created test for EnsembleBuilder?

Feb 20, 2006:

7:37 PM Changeset [516] by Peter
added function generating weight matrix with respect to not-a-number …
7:36 PM Changeset [515] by Peter
fixed indentation for doxygen
6:28 PM Ticket #50 (implement matrix.binary_weight(void)) created by Peter
function returning a matrix in which each element is set to unity …
10:45 AM Changeset [514] by Peter
generalised binary functionality in Target

Feb 18, 2006:

5:04 PM Ticket #38 (add weights to SVM (kernel)) closed by Peter
fixed: fixed by introducing two new classes. Chose having a forest of classes …
5:02 PM Changeset [513] by Peter
added kernels using weights
4:06 PM Changeset [512] by Peter
moved common member variables to base class Kernel
3:55 PM Ticket #39 (Fix NCC) closed by Peter
fixed: Fixed
3:49 PM Ticket #46 (median functions should be coherent) closed by Peter
fixed: Still use full sort since we in case of an even number of data points …
3:47 PM Ticket #45 (test median functions) closed by Peter
fixed: Fixed
3:46 PM Changeset [511] by Peter
added percentile function for gslapi::vector
3:21 PM Changeset [510] by Peter
fixed nan return in AveragerPair::ccc()
3:19 PM Ticket #43 (AveragerPair return 'nan' for some member functions when no data has ...) closed by Peter
fixed: Fixed it for concordance correlation coefficient.
2:57 PM Ticket #47 (CrossSplitter::validation_data does not return constant number of samples) closed by Peter
fixed: Fixed. The samples are divided into k groups. Each group is as …
2:47 PM Changeset [509] by Peter
added test for target redesign crossSplitter added two class function …

Feb 17, 2006:

1:08 AM Changeset [508] by Jari Häkkinen
Removed autotools directory that should not exist here (autotools …
1:02 AM Changeset [507] by Jari Häkkinen
Reverting these files to revision 505; these were changed by mistake.
12:56 AM Changeset [506] by Jari Häkkinen
Fixed spelling error.

Feb 16, 2006:

4:50 PM Ticket #49 (ConsensusInputRanker.add(InputRanker)) created by Peter
Add function adding an individual ranking from outside. In this way …

Feb 15, 2006:

4:12 AM Ticket #48 (implement SVM::predict) created by Peter
It is done for taking kernel or vector value, but should also take …
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