Timeline



Sep 8, 2006:

11:42 AM Changeset [645] by Markus Ringnér
Minor things
11:17 AM Ticket #138 (utility::matrix add function could be operator+=) created by Peter
The functions below look pretty much like operator+=, don't they? […]

Sep 7, 2006:

2:38 PM Changeset [644] by Jari Häkkinen
Set svndigest:ignore property on test data.
2:35 PM Changeset [643] by Jari Häkkinen
These are now superseeded by svndigest project, …
11:13 AM Changeset [642] by Peter
adding class for selecting features by random
9:52 AM Changeset [641] by Peter
added tag for Doxygen preprocessor to exclude internal Index class in SVM
9:27 AM Ticket #137 ("include" information in Doxygen) created by Peter
Doxygen only display file name e.g. #include <vector.h>, but it would …
7:38 AM Ticket #136 (Reference counter in Kernel) created by Peter
The problem is the same (not as severe though) as in DataLookup2D (#95).
7:11 AM Tickets #132,​95 batch updated by Peter
fixed: (In [640]) fixes #132 and #95, and refs #135 replaced bool owner in …
7:11 AM Changeset [640] by Peter
fixes #132 and #95, and refs #135 replaced bool owner in DataLookup2D …
6:36 AM Ticket #135 (Update documentation on DataLookup2D and daughter classes) created by Peter
2:19 AM Ticket #134 (BootstrapSampler) created by Peter
inherited from Sampler. What are the characteristics of Boostrap? …

Sep 6, 2006:

2:31 PM Ticket #133 (documentation bugs) created by Markus Ringnér
There are a bunch of comments that produce errors in the …
2:18 PM Changeset [639] by Markus Ringnér
Fixed documentation bugs
12:11 PM Changeset [638] by Markus Ringnér
Fixes #131
12:11 PM Ticket #131 (MatrixLookupWeighted constructor taking ONE utility::matrix) closed by Markus Ringnér
fixed: (In [638]) Fixes #131
9:54 AM Ticket #132 (SubsetGenerator with FeatureSelector crashes) created by Peter
4:15 AM Ticket #96 (Feature selection should not be part of SupervisedClassifier) closed by Peter
fixed
4:14 AM Ticket #122 (support feature selection in SubsetGenerator with Kernel built from ...) closed by Peter
fixed: (In [637]) fixes #122
4:14 AM Changeset [637] by Peter
fixes #122
3:51 AM Ticket #120 (remove weights in SubsetGenerator) closed by Peter
fixed: (In [636]) closes #120 removed weights from SubsetGenerator?
3:51 AM Changeset [636] by Peter
closes #120 removed weights from SubsetGenerator?
3:41 AM Ticket #131 (MatrixLookupWeighted constructor taking ONE utility::matrix) created by Peter
Internally a weight matrix is created using matrix::nan(). …
3:23 AM Ticket #119 (NCC and weights) closed by Peter
fixed: fixed in [632]
3:20 AM Ticket #106 (Disconnect SupervisedClassifier from SubsetGenerator) closed by Peter
fixed: (In [635]) closes #106 make_classifier is again taking DataLookup2D …
3:20 AM Changeset [635] by Peter
closes #106 make_classifier is again taking DataLookup2D and Target …
2:48 AM Ticket #130 (KernelLookups and MatrixLookups not in inheritance structure but template) created by Peter
This is just a thought: What would happen if we removed DataLookup2D …
2:32 AM Ticket #129 (avoid kernels in NCC) created by Peter
NCC has no constructor taking KernelLookup?& (or DataLookup2D&). Good. …

Sep 5, 2006:

3:54 PM Ticket #59 (NCC should accept external quality weights) closed by Markus Ringnér
fixed
3:50 PM Changeset [634] by Markus Ringnér
Fixed NCC predict to work with MatrixLookupWeighted?
1:57 PM Changeset [633] by Markus Ringnér
Minor fix
1:52 PM Changeset [632] by Markus Ringnér
Changes in NCC to support weight using MatrixLookupWeighted?. Still …
10:47 AM Ticket #102 (bool is_weighted() function in DataLook2D) closed by Peter
fixed: (In [631]) fixes #102 added weighted() to DataLookup2D.
10:47 AM Changeset [631] by Peter
fixes #102 added weighted() to DataLookup2D.
10:37 AM Ticket #117 (remove temporary interface in InputRanker with two MatrixLookup) closed by Peter
fixed: (In [630]) fixes #117
10:37 AM Changeset [630] by Peter
fixes #117
10:31 AM Ticket #125 (KerneFunction remove obsolete operator() taking FOUR arguments) closed by Peter
fixed: (In [629]) fixes #125 removing obsolete function and cleaning in …
10:31 AM Changeset [629] by Peter
fixes #125 removing obsolete function and cleaning in Kernel classes.
9:22 AM Tickets #116,​90 batch updated by Peter
fixed: (In [628]) fixes #116 and #90 removed classes KernelWeighted_SEV and …
9:22 AM Changeset [628] by Peter
fixes #116 and #90 removed classes KernelWeighted_SEV and …
7:42 AM Ticket #128 (Averagers should have interface against iterators) created by Peter
I suggest we remove interface against all containers and only have …
7:39 AM Ticket #124 (overload operator() in KernelFunction) closed by Peter
fixed: (In [627]) fixes #124 also extended interface of AveragerPairWeighted?
7:39 AM Changeset [627] by Peter
fixes #124 also extended interface of AveragerPairWeighted? supporting …
7:07 AM Ticket #127 (Use Distance::Euclidean in GaussianKernelFunction) created by Peter
K = exp(-(x-y)2/width ) where (x-y)2 is the Euclidean distance so …
7:01 AM Ticket #126 (Euclidean distance class) created by Peter
distance calculated as sum (x_i-y_i)2 also extend Distance interface …
5:51 AM Ticket #125 (KerneFunction remove obsolete operator() taking FOUR arguments) created by Peter
needs #116
5:48 AM Ticket #124 (overload operator() in KernelFunction) created by Peter
we need the following combinations of arguments * (const …
4:54 AM Tickets #113,​114 batch updated by Peter
fixed: (In [626]) fixes #113 and #114 removed Featureselection from NCC and …
4:54 AM Changeset [626] by Peter
fixes #113 and #114 removed Featureselection from NCC and …
4:37 AM Ticket #115 (remove feature selection stuff from SVM) closed by Peter
fixed: (In [625]) fixes #115 and ref #113 removed feature selection from SVM
4:37 AM Changeset [625] by Peter
fixes #115 and ref #113 removed feature selection from SVM
4:29 AM Tickets #110,​109 batch updated by Peter
fixed: (In [624]) fixes #109 and #110
4:29 AM Changeset [624] by Peter
fixes #109 and #110
4:13 AM Ticket #112 (Score classes taking DataLookup1DWeighted) closed by Peter
fixed: (In [623]) fixes #112 and refs #123 added overloaded function score …
4:13 AM Changeset [623] by Peter
fixes #112 and refs #123 added overloaded function score taking Target …
3:56 AM Ticket #123 (document SNR::score weighted version) created by Peter
3:29 AM Ticket #111 (DataLookup1DWeighted) closed by Peter
fixed: (In [622]) fixes #111
3:29 AM Changeset [622] by Peter
fixes #111
3:27 AM trac_usage edited by Peter
(diff)
2:21 AM Ticket #108 (dynamic_cast in SubsetGenerator using featureSelection) closed by Peter
fixed: (In [621]) fixes #108 SubsetGenerator? with featureselection is now …
2:21 AM Changeset [621] by Peter
fixes #108 SubsetGenerator? with featureselection is now supported for …
2:12 AM Ticket #122 (support feature selection in SubsetGenerator with Kernel built from ...) created by Peter
needs #116 #120 ref #108 needed for #96

Sep 4, 2006:

5:16 PM Changeset [620] by Markus Ringnér
Fixed problems with Averager that sometimes appeared as failures in …
8:58 AM Ticket #121 (garbage_ in FeatureSelector should it be there?) created by Peter
8:46 AM Ticket #120 (remove weights in SubsetGenerator) created by Peter
needs #108 #119 needed for #122
8:45 AM Ticket #119 (NCC and weights) created by Peter
needed for #120 NCC should not have an interface with two …
7:59 AM Ticket #118 (Overhaul of configure.ac) created by Jari Häkkinen
A couple of checks in configure.ac are not behaving properly (an …
7:59 AM Ticket #117 (remove temporary interface in InputRanker with two MatrixLookup) created by Peter
ref #109 #110
7:56 AM Ticket #116 (use MatrixLookupWeighted in Kernel) created by Peter
needs #111 #124
7:48 AM Ticket #115 (remove feature selection stuff from SVM) created by Peter
needed for #113
7:47 AM Ticket #114 (remove feature selection stuff from NCC) created by Peter
needed for #113
7:47 AM Ticket #113 (remove feature selection stuff from SupervisedClassifier) created by Peter
in particular from make_classifier needed for #96 needs #114 #115
7:37 AM Ticket #112 (Score classes taking DataLookup1DWeighted) created by Peter
needs #111 needed for #96 #110 overload operator() taking …
7:33 AM Ticket #111 (DataLookup1DWeighted) created by Peter
needed for #96 #110 #116 A new class looking very much like …
7:30 AM Ticket #110 (InputRanker interface: MatrixLookup and MatrixLookupWeighted) created by Peter
needs #108 #109 #111 #112 needed for #96 Instead of DataLookup2D …
7:24 AM Ticket #109 (weights and FeatureSelector) created by Peter
In FeatureSelector? update and get should be overloaded taking …
7:19 AM Ticket #108 (dynamic_cast in SubsetGenerator using featureSelection) created by Peter
Since FeatureSelection? only accepts MatrixLookup? and …
6:27 AM trac_usage edited by Peter
(diff)
6:20 AM Ticket #107 (bug in ensemble.build()) closed by Peter
fixed: (In [619]) fixes #107 and refs #105 fixed bug in EnsembleBuilder? and …
6:20 AM Changeset [619] by Peter
fixes #107 and refs #105 fixed bug in EnsembleBuilder? and removed some …

Sep 3, 2006:

9:20 AM Ticket #107 (bug in ensemble.build()) created by Peter
Using ensemble.build in test leads to a core dump. It looks like a …
9:12 AM Ticket #60 (Split CrossSplitter into Sampler and SubSet) closed by Peter
fixed: fixed in [615]
9:10 AM Ticket #54 (CrossSplitter of type Matrix from CrossSplitter of type Kernel) closed by Peter
wontfix: ticket:60 fixes this
9:02 AM Ticket #106 (Disconnect SupervisedClassifier from SubsetGenerator) created by Peter
With the introduction of MatrixLookupWeighted? I don't think there is a …
8:20 AM Changeset [618] by Peter
removing branch

Sep 2, 2006:

4:32 AM trac_usage edited by Peter
(diff)
2:09 AM trac_usage created by Jari Häkkinen
Added ticket usage information.
1:44 AM WikiStart edited by Jari Häkkinen
Added link to trac usage guidelines. (diff)

Sep 1, 2006:

2:37 AM Ticket #105 (remove asserts in header files) created by Peter
I don't think it's good style to have asserts in header files. The …

Aug 31, 2006:

11:10 AM Ticket #83 (Change name of the project!!) reopened by Jari Häkkinen
11:10 AM Ticket #84 (Move gslapi stuff to utility) closed by Jari Häkkinen
fixed
10:59 AM Ticket #83 (Change name of the project!!) closed by Jari Häkkinen
fixed
10:58 AM Changeset [617] by Jari Häkkinen
Cleaned up stray gslapi stuff.
10:52 AM Changeset [616] by Jari Häkkinen
Removed gslapi namespace and put the code into utility namespace. Move …
7:33 AM Changeset [615] by Peter
ref #60 NOTE: there is most likely a bug around. I have removed the …
7:08 AM Changeset [614] by Jari Häkkinen
Minor fixes in doxygen documentation.

Aug 30, 2006:

4:40 PM Changeset [613] by Markus Ringnér
Sampler and SubsetGenerator? in progress. Fixes #103
4:40 PM Ticket #103 (Sampler should be abstract) closed by Markus Ringnér
fixed: (In [613]) Sampler and SubsetGenerator? in progress. Fixes #103
2:56 PM Changeset [612] by Peter
2:39 PM Changeset [611] by Markus Ringnér
Fixes #100
2:39 PM Ticket #100 (gslapi::matrix::nan()) closed by Markus Ringnér
fixed: (In [611]) Fixes #100
1:54 PM Ticket #104 (Why state_ in Sampler and SubsetGenerator?) created by Peter
Is it only for historical reasons there was a state in CrossSplitter?
1:15 PM Ticket #103 (Sampler should be abstract) created by Peter
How to get Sampler abstract when it has no virtual functions? Virtual …
1:13 PM Changeset [610] by Peter
ref #60 Sampler and inherited CrossValidationSampler?.
10:49 AM Changeset [609] by Markus Ringnér
Fixes #98
10:49 AM Ticket #98 (is_int("1.2") returns true) closed by Markus Ringnér
fixed: (In [609]) Fixes #98
9:40 AM Ticket #102 (bool is_weighted() function in DataLook2D) created by Peter

Aug 29, 2006:

4:45 PM Changeset [608] by Peter
set properties
4:42 PM Changeset [607] by Peter
ref #96 included FeatureSelection? in CrossSplitter?. Also happened to …
12:25 PM Changeset [606] by Peter
ref #96 added missing functionality in FeatureSelector?
12:12 PM Changeset [605] by Peter
simple test for FeatureSelector?
11:45 AM Changeset [604] by Peter
ref #96 Changed InputRanker? to return vector of index rather than …
9:11 AM Ticket #101 (separate Score functionality from heavy ammo) created by Peter
Score classes should be light and in particular they should be …
8:59 AM Ticket #100 (gslapi::matrix::nan()) created by Peter
reimplement it to be bool matrix::nan(matrix& m) return true if …
6:23 AM Changeset [603] by Peter
set properties
5:10 AM Ticket #99 (document CommandLine class) closed by Peter
fixed: (In [602]) closes #99 documentation on CommandLine? class
5:10 AM Changeset [602] by Peter
closes #99 documentation on CommandLine? class
3:45 AM Changeset [601] by Peter
set properties on CommandLine? and Option files
3:33 AM Changeset [600] by Peter
removed stupid trailing character
3:31 AM Changeset [599] by Peter
updated corresponding test... well it's not a test it's more of an example.
3:28 AM Changeset [598] by Peter
Changed interface of CommandLine? so short option is set with char. …

Aug 28, 2006:

3:03 PM Changeset [597] by Markus Ringnér
Fixed comments so they pass without some of the complaits from …
1:20 PM Changeset [596] by Peter
some doc
1:11 PM Changeset [595] by Peter
added MatrixLookupWeighted? class containing both data and weights
9:49 AM Ticket #99 (document CommandLine class) created by Peter
9:48 AM Ticket #91 (Parameter class) closed by Peter
fixed: (In [594]) closes #91 class parsing commandline
9:47 AM Changeset [594] by Peter
closes #91 class parsing commandline
6:24 AM Ticket #98 (is_int("1.2") returns true) created by Peter
In my opinion, this is not intuitive and expected. I expect "1.2" not …
3:14 AM Ticket #97 (copyright in test source) created by Peter
Should there be copyright headers in test source files as well?

Aug 26, 2006:

9:43 AM Ticket #96 (Feature selection should not be part of SupervisedClassifier) created by Peter
needs #108 #109 #110 #111 #112 #113 #114 #115 #116 #120 #122 The …
9:14 AM Ticket #95 (ownership in Lookups is not optimal) created by Peter
Say we have a MatrixLookup? ml and we create a new MatrixLookup? using …

Aug 25, 2006:

3:02 PM Ticket #71 (Test that output from classifier::DataLook1D can be read by gslapi::vector) closed by Markus Ringnér
fixed
2:59 PM Changeset [593] by Markus Ringnér
Fixed std includes to compile with g++ 4.1.
5:05 AM Ticket #72 (Document Kernel class) reopened by Peter
Due to not redesigning feature selction for SVM ticket:86 there are …
5:02 AM Ticket #86 (SVM should use a MatrixLookup (and not KernelLookup) when feature ...) closed by Peter
wontfix: Letting the SVM taking MatrixLookup? means the SVM must know how to …

Aug 24, 2006:

1:23 PM Ticket #72 (Document Kernel class) closed by Peter
fixed
1:23 PM Ticket #89 (document DataLookup2D) closed by Peter
fixed
1:23 PM Ticket #73 (Document KernelLookup) closed by Peter
fixed
1:22 PM Ticket #94 (Target.random_shuffle()) closed by Peter
fixed
1:21 PM Ticket #70 (Document ConsensusInputRanker) closed by Peter
fixed
1:18 PM Changeset [592] by Peter
added random_shuffle function in Target class
1:17 PM Changeset [591] by Peter
added random_shuffle function in Target class
1:16 PM Ticket #74 (Document MatrixLookup) closed by Peter
fixed: (In [590]) closes #74 documentation
1:15 PM Changeset [590] by Peter
closes #74 documentation
1:08 PM Ticket #79 (Document statistics::tScore::score()) closed by Peter
fixed: (In [589]) closes #79 and cleaned up code
1:08 PM Changeset [589] by Peter
closes #79 and cleaned up code
5:17 AM Ticket #94 (Target.random_shuffle()) created by Peter
Randomly relabel samples is needed for e.g. running a permutation test.
4:11 AM Ticket #93 (EnsembleBuilder crashes if validate() is called before build()) created by Peter

Aug 23, 2006:

10:14 AM Ticket #92 (EnsembleValidator) created by Peter
Having built a Ensemble we need to validate its performance. For this …

Aug 22, 2006:

5:41 AM Ticket #91 (Parameter class) created by Peter
In every project appears a Parameter class taking care of cmd line …

Aug 18, 2006:

8:50 AM Ticket #90 (rows, columns, and size functions are redundant in Kernel) created by Peter
I cannot see the use of having all these three functions. If size() …

Aug 17, 2006:

9:06 AM Ticket #89 (document DataLookup2D) created by Peter

Aug 11, 2006:

8:51 AM Ticket #88 (Add SAM Score class) created by Peter
see link below for details …
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