Timeline



Oct 12, 2006:

12:38 AM Ticket #153 (Change namespace hierarchy) closed by Jari Häkkinen
fixed: All changes made and all tests pass. User program has to be changed …
12:20 AM Changeset [683] by Jari Häkkinen
Addresses #153. Clean up of code.
12:06 AM Changeset [682] by Jari Häkkinen
Addresses #153. Moved regression files to .../yat/regression.

Oct 11, 2006:

11:38 PM Changeset [681] by Jari Häkkinen
Moved namespace regression up one level (leaving namespace statistics).
7:49 PM Changeset [680] by Jari Häkkinen
Addresses #153. Introduced yat namespace. Removed alignment namespace. …
2:37 PM Changeset [679] by Markus Ringnér
Fixed some minor stuff so it compiles on eddie.thep.lu.se running g++3.2
11:25 AM Ticket #154 (clarify Target::labels()) created by Peter
We should clarify that the size of the returned vector is the number …

Oct 10, 2006:

11:14 PM WikiStart edited by Jari Häkkinen
Replaced c++ tools with yat. (diff)
11:09 PM Changeset [678] by Jari Häkkinen
Added yat logo.
11:03 PM trac_usage edited by Jari Häkkinen
Added info on later milestone usage. (diff)
3:15 PM Changeset [677] by Jari Häkkinen
Removed stray ! characters.
2:38 PM Ticket #83 (Change name of the project!!) closed by Jari Häkkinen
fixed: (In [676]) Fixed #83. This message applies to this revision and …
2:38 PM Changeset [676] by Jari Häkkinen
Fixed #83. This message applies to this revision and revision:675. …
2:08 PM Changeset [675] by Jari Häkkinen
References #83. Changing project name to yat. Compilation will fail in …
2:28 AM Ticket #152 (get and set state of RNG) closed by Peter
fixed: (In [674]) fixes #152
2:28 AM Changeset [674] by Peter
fixes #152

Oct 9, 2006:

8:09 PM Ticket #153 (Change namespace hierarchy) created by Jari Häkkinen
It was decided that the namespace structure is: theplu::yat::utility …

Oct 7, 2006:

2:09 PM Ticket #152 (get and set state of RNG) created by Peter
"It is often useful to be able to save and restore the state." - GSL …
11:00 AM Changeset [673] by Peter
fixed dox in SNR
8:44 AM Changeset [672] by Peter
added MAD function in statistics
8:25 AM Changeset [671] by Peter
fixed some percentile dox refs #69
7:35 AM Changeset [670] by Peter
added cv function in Averager
6:42 AM Ticket #88 (Add SAM Score class) closed by Peter
fixed: (In [669]) #closes #88. SAM score class added
6:42 AM Changeset [669] by Peter
#closes #88. SAM score class added

Oct 6, 2006:

9:05 AM Changeset [668] by Peter
removing debug code
9:03 AM Changeset [667] by Peter
refs #151 using Functor now in consensusinputranker to retrieve …
6:07 AM Changeset [666] by Peter
refs #151, added IRRetreive functors and prepared ConsensusInputRanker?

Oct 5, 2006:

7:48 AM Ticket #142 (Scores from the Inputranker) closed by Peter
fixed: (In [665]) Fixes #142. Added access to score the InputRanking? is based …
7:48 AM Changeset [665] by Peter
Fixes #142. Added access to score the InputRanking? is based upon. …

Oct 4, 2006:

4:41 AM Ticket #151 (ConsensusInputRanker more flexible) created by Peter
There are two options that are hard coded in the ConsensusInputRanker?. …

Sep 29, 2006:

4:04 PM WikiStart edited by Peter
fixed grammatical typo (diff)
3:14 PM Ticket #150 (microarray::DataSet) created by Peter
See also #82 #415 Could contain: * a class Probe(set)Info giving …
11:47 AM Changeset [664] by Peter
modified TODO to be in line with the Trac pages
11:42 AM Changeset [663] by Peter
added assignment operator in Target

Sep 27, 2006:

12:16 PM Changeset [662] by Peter
refs #57 added class for Naive Baysian Classification. Predict …
11:11 AM Changeset [661] by Peter
refs #68 added link to Weighted statistics document and svndigest …
10:54 AM Ticket #140 (Don't keep SVM and Index in same file) closed by Peter
fixed: (In [660]) closes #140 moved Index class to its own file and changed …
10:53 AM Changeset [660] by Peter
closes #140 moved Index class to its own file and changed name to SVindex

Sep 26, 2006:

3:44 PM Tickets #147,​136 batch updated by Peter
fixed: (In [659]) fixes #147 and #136
3:44 PM Changeset [659] by Peter
fixes #147 and #136
3:41 PM Ticket #149 (Target constructor from Target and vector<string>) created by Peter
The constructor being very similar to the vector<string> Constructor, …
12:51 PM Ticket #148 (use pointer dynamic_cast when failure is ecpected) created by Peter
We are using dynamic_cast in quite a few places in classifier::. After …

Sep 25, 2006:

8:27 AM Ticket #147 (KernelLookup::test_kernel does not work) created by Peter
4:14 AM Ticket #146 (remove selected() in Kernel - use make_kernel() instead) created by Peter
4:12 AM Changeset [658] by Peter
added function in KernelLookup? to create a KernelLookup? from inner …

Sep 22, 2006:

12:19 PM Changeset [657] by Peter
finishing cleaning
12:08 PM Ticket #145 (Clean up interface of DataLookup2D (and daughters)) closed by Peter
fixed: (In [656]) fixes #145 cleaning up interface of DataLook2D. Those …
12:07 PM Changeset [656] by Peter
fixes #145 cleaning up interface of DataLook2D. Those function were …
10:37 AM Changeset [655] by Peter
improved documentation on EnsembleBulder::predict
10:29 AM Ticket #145 (Clean up interface of DataLookup2D (and daughters)) created by Peter
Some functions are neither used nor necessary, for example: const …
10:24 AM Changeset [654] by Peter
replaced some double-spaces with tabs making Doxygen parsing the …

Sep 21, 2006:

4:03 AM Changeset [653] by Peter
updated copyright statement
4:01 AM Changeset [652] by Peter
added tag in config file so namespaces are included in sorting class …
3:58 AM Changeset [651] by Peter
corrected dox in Kernel classes

Sep 19, 2006:

7:55 AM Ticket #144 (Tie in ROC) created by Peter
Behaviour when ties are present appears to be random.
7:51 AM Ticket #143 (add access to InputRankers in ConsensusInputRanker) created by Peter
7:50 AM Ticket #142 (Scores from the Inputranker) created by Peter
Add access to the scores that ranking is based on

Sep 15, 2006:

5:12 PM Changeset [650] by Peter
corrected documentation to be in line with guidinglines
4:03 PM Changeset [649] by Jari Häkkinen
Fixed typo in doxygen comment.

Sep 14, 2006:

8:24 AM Ticket #141 (unknown Target) created by Peter
ref #139 Would it make sense to have unknown Targets? My case is …
5:49 AM Ticket #55 (smart dynamically allocated Lookups) closed by Peter
wontfix
5:17 AM Ticket #140 (Don't keep SVM and Index in same file) created by Peter
Move Index to its own files and change name of class to SVIndex. Tell …
5:04 AM Ticket #133 (documentation bugs) closed by Peter
fixed: (In [648]) fixes #133 removed all errors reported from Doxygen. Only …
5:04 AM Changeset [648] by Peter
fixes #133 removed all errors reported from Doxygen. Only one error …

Sep 13, 2006:

1:01 PM Ticket #137 ("include" information in Doxygen) closed by Peter
fixed: (In [647]) fixes #137 added flag for doxygen to write includes in …
1:01 PM Changeset [647] by Peter
fixes #137 added flag for doxygen to write includes in preferable way.
7:04 AM Changeset [646] by Peter
removing pointer_comare because it is not a pointer_compare but rather …

Sep 12, 2006:

11:07 AM Ticket #139 (Combinations of Target objects) created by Peter
See also #150 The Target has got some binary functionality see e.g. …
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