Timeline



Oct 25, 2006:

12:33 PM Changeset [697] by Peter
added features to Regression::OneDimensional? and moved thing not being …
12:13 PM Changeset [696] by Peter
added msd function in regression
11:44 AM Ticket #161 (PolynomialWeighted::standard_error) created by Peter
Check that implementation match specification (docs in base class). …
11:43 AM Ticket #160 (LinearWeighted::standard_error) created by Peter
Check that implementation match specification (docs in base class). …
11:41 AM Ticket #159 (NaiveWeighted::standard_error) created by Peter
Check that implementation match specification (docs in base class). …
11:24 AM Ticket #158 (Check implementation of OneDimensional) created by Peter
Check classes inherited from OneDimesnional?. Check that the inherited …
11:20 AM Changeset [695] by Peter
References #81 improved documentation
10:04 AM Changeset [694] by Peter
refs #118 Added flag to configure '--enable-debug'. If this flag is …
4:12 AM Ticket #157 (make Commandline::print_try_help(void) public) created by Peter
Perhaps a name change would be appropriate, but the function is useful …

Oct 24, 2006:

1:02 PM Ticket #156 (Two-sided vs One-sided P-values in ROC) created by Peter
I get the same p-value using absolute=true and absolute=false. The doc …

Oct 22, 2006:

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Oct 17, 2006:

3:03 PM Changeset [693] by Jari Häkkinen
Clarified doc and comments.
2:53 PM Ticket #155 (Current vector implementation can cause "unexpected" runtime aborts if ...) created by Jari Häkkinen
The summary is somewhat cryptic. The problem arises from the fact that …
2:14 PM Ticket #56 (SVM convergence problem) closed by Peter
fixed
2:13 PM Changeset [692] by Peter
Fixes #56 and some doxygen issues for SVM
2:12 PM Changeset [691] by Peter
added description on microarray namespace
2:11 PM Changeset [690] by Peter
fixed automake issue
1:26 PM Changeset [689] by Peter
Fixed some Makefile issues in microarray
1:10 PM Changeset [688] by Peter
Refs #150 Initial check-in of microarray::DataSet? class. This …
1:55 AM Ticket #17 (constness of views do not work ... or do they?) closed by Jari Häkkinen
fixed: Fixes #17. Constness of vectors and views are stricltly maintained. …
1:51 AM Changeset [687] by Jari Häkkinen
Clean up of namespace comments.
1:33 AM Changeset [686] by Jari Häkkinen
Fixes #17. Constness of vectors and views are stricltly maintained. …
1:25 AM Changeset [685] by Jari Häkkinen
Changing a vector view to be a const view as it should be.

Oct 13, 2006:

7:35 PM Changeset [684] by Jari Häkkinen
Cleaning.

Oct 12, 2006:

12:38 AM Ticket #153 (Change namespace hierarchy) closed by Jari Häkkinen
fixed: All changes made and all tests pass. User program has to be changed …
12:20 AM Changeset [683] by Jari Häkkinen
Addresses #153. Clean up of code.
12:06 AM Changeset [682] by Jari Häkkinen
Addresses #153. Moved regression files to .../yat/regression.

Oct 11, 2006:

11:38 PM Changeset [681] by Jari Häkkinen
Moved namespace regression up one level (leaving namespace statistics).
7:49 PM Changeset [680] by Jari Häkkinen
Addresses #153. Introduced yat namespace. Removed alignment namespace. …
2:37 PM Changeset [679] by Markus Ringnér
Fixed some minor stuff so it compiles on eddie.thep.lu.se running g++3.2
11:25 AM Ticket #154 (clarify Target::labels()) created by Peter
We should clarify that the size of the returned vector is the number …

Oct 10, 2006:

11:14 PM WikiStart edited by Jari Häkkinen
Replaced c++ tools with yat. (diff)
11:09 PM Changeset [678] by Jari Häkkinen
Added yat logo.
11:03 PM trac_usage edited by Jari Häkkinen
Added info on later milestone usage. (diff)
3:15 PM Changeset [677] by Jari Häkkinen
Removed stray ! characters.
2:38 PM Ticket #83 (Change name of the project!!) closed by Jari Häkkinen
fixed: (In [676]) Fixed #83. This message applies to this revision and …
2:38 PM Changeset [676] by Jari Häkkinen
Fixed #83. This message applies to this revision and revision:675. …
2:08 PM Changeset [675] by Jari Häkkinen
References #83. Changing project name to yat. Compilation will fail in …
2:28 AM Ticket #152 (get and set state of RNG) closed by Peter
fixed: (In [674]) fixes #152
2:28 AM Changeset [674] by Peter
fixes #152

Oct 9, 2006:

8:09 PM Ticket #153 (Change namespace hierarchy) created by Jari Häkkinen
It was decided that the namespace structure is: theplu::yat::utility …

Oct 7, 2006:

2:09 PM Ticket #152 (get and set state of RNG) created by Peter
"It is often useful to be able to save and restore the state." - GSL …
11:00 AM Changeset [673] by Peter
fixed dox in SNR
8:44 AM Changeset [672] by Peter
added MAD function in statistics
8:25 AM Changeset [671] by Peter
fixed some percentile dox refs #69
7:35 AM Changeset [670] by Peter
added cv function in Averager
6:42 AM Ticket #88 (Add SAM Score class) closed by Peter
fixed: (In [669]) #closes #88. SAM score class added
6:42 AM Changeset [669] by Peter
#closes #88. SAM score class added

Oct 6, 2006:

9:05 AM Changeset [668] by Peter
removing debug code
9:03 AM Changeset [667] by Peter
refs #151 using Functor now in consensusinputranker to retrieve …
6:07 AM Changeset [666] by Peter
refs #151, added IRRetreive functors and prepared ConsensusInputRanker?

Oct 5, 2006:

7:48 AM Ticket #142 (Scores from the Inputranker) closed by Peter
fixed: (In [665]) Fixes #142. Added access to score the InputRanking? is based …
7:48 AM Changeset [665] by Peter
Fixes #142. Added access to score the InputRanking? is based upon. …

Oct 4, 2006:

4:41 AM Ticket #151 (ConsensusInputRanker more flexible) created by Peter
There are two options that are hard coded in the ConsensusInputRanker?. …

Sep 29, 2006:

4:04 PM WikiStart edited by Peter
fixed grammatical typo (diff)
3:14 PM Ticket #150 (microarray::DataSet) created by Peter
See also #82 #415 Could contain: * a class Probe(set)Info giving …
11:47 AM Changeset [664] by Peter
modified TODO to be in line with the Trac pages
11:42 AM Changeset [663] by Peter
added assignment operator in Target

Sep 27, 2006:

12:16 PM Changeset [662] by Peter
refs #57 added class for Naive Baysian Classification. Predict …
11:11 AM Changeset [661] by Peter
refs #68 added link to Weighted statistics document and svndigest …
10:54 AM Ticket #140 (Don't keep SVM and Index in same file) closed by Peter
fixed: (In [660]) closes #140 moved Index class to its own file and changed …
10:53 AM Changeset [660] by Peter
closes #140 moved Index class to its own file and changed name to SVindex

Sep 26, 2006:

3:44 PM Tickets #147,​136 batch updated by Peter
fixed: (In [659]) fixes #147 and #136
3:44 PM Changeset [659] by Peter
fixes #147 and #136
3:41 PM Ticket #149 (Target constructor from Target and vector<string>) created by Peter
The constructor being very similar to the vector<string> Constructor, …
12:51 PM Ticket #148 (use pointer dynamic_cast when failure is ecpected) created by Peter
We are using dynamic_cast in quite a few places in classifier::. After …

Sep 25, 2006:

8:27 AM Ticket #147 (KernelLookup::test_kernel does not work) created by Peter
4:14 AM Ticket #146 (remove selected() in Kernel - use make_kernel() instead) created by Peter
4:12 AM Changeset [658] by Peter
added function in KernelLookup? to create a KernelLookup? from inner …
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