Timeline



Jun 19, 2008:

11:00 PM Changeset [1346] by Peter
adding some stuff in version test
9:23 PM Ticket #375 (send dogygen error message to a file) closed by Peter
fixed: sorry should be [1345]
9:21 PM Ticket #372 (version.h is not found by doxygen (when using VPATH)) closed by Peter
fixed: fixed in [1344]
9:20 PM Changeset [1345] by Peter
send doxygen error to a file - fixes #375
9:15 PM Changeset [1344] by Peter
let doxygen parse in builddir as well

Jun 18, 2008:

7:05 PM Ticket #383 (why both operator() and operator[] in Target?) closed by Peter
fixed: deprecated Target::operator[] in [1343] since it is only calling …
7:03 PM Changeset [1343] by Peter
deprecating Target::operator[]
6:47 PM Ticket #383 (why both operator() and operator[] in Target?) created by Peter
6:46 PM Ticket #382 (Create an Index object from a string in Target class) created by Peter
The class could be used to easily get which samples that belong to …
6:09 PM Changeset [1342] by Peter
fixing doxygen problems

Jun 17, 2008:

5:19 PM Changeset [1341] by Peter
correcting docs

Jun 12, 2008:

8:51 PM Changeset [1340] by Peter
fixing so declarations match implementations

Jun 7, 2008:

1:58 AM Changeset [1339] by Peter
Adding \since tag for new classes and functions
12:13 AM Changeset [1338] by Peter
updating docs

Jun 6, 2008:

9:00 PM Changeset [1337] by Peter
correcting docs
8:52 PM Changeset [1336] by Peter
oops
7:42 PM Changeset [1335] by Peter
missing from last commit
7:41 PM Changeset [1334] by Peter
Adding class Range

Jun 4, 2008:

4:59 PM Ticket #381 (Generalize Kernel_MEV) created by Peter
A matrix that calculates its element on the fly. It holds two ranges: …

Jun 3, 2008:

9:38 PM Ticket #380 (Default argument in OptionArg) created by Peter
Does it make sense to be able to set a default argument, i.e., if the …
8:36 PM Ticket #379 (Document how output created by OptionHelp) created by Peter
Give an example and explain how it can be tailored using the member …

May 31, 2008:

11:46 PM Changeset [1333] by Peter
updating copyright
11:37 PM Ticket #378 (FileUtil::exists() fails on large files) closed by Peter
fixed: in [1332]
11:36 PM Changeset [1332] by Peter
fixes #378

May 30, 2008:

2:48 AM Changeset [1331] by Peter
oops mistake in previous commit
2:33 AM Changeset [1330] by Peter
update LT_VERSION (a++) since implementation (in FileUtil?) was …
2:02 AM Ticket #378 (FileUtil::exists() fails on large files) created by Peter
Calling FileUtil::exists() on a large (37Gb) file results in […] …
12:55 AM Changeset [1329] by Peter
Fixed bug with errno. errno is int and taking string+int is not healthy.

May 29, 2008:

10:46 PM Ticket #377 (class for nucleotides) created by Peter
I need some utilities for dealing with sequences of nucleotides both …
10:12 PM Ticket #376 (configure reports flag info that may be misleading) created by Peter
In end of confiugure.ac we have these lines […] giving a summary …
4:46 PM Ticket #375 (send dogygen error message to a file) created by Peter
related to ticket:374 and ticket:162 Currently the error message is …
11:09 AM Ticket #233 (Links to documentation are broken) closed by Jari Häkkinen
fixed: Fixed, the trunk docs are not up to date.
10:58 AM Ticket #374 (Make documentation cron job report failures through email to maintainer.) created by Jari Häkkinen
related to ticket:375

May 28, 2008:

6:55 PM Ticket #233 (Links to documentation are broken) reopened by Peter
Link to trunk docs is broken again.

May 27, 2008:

5:50 PM Ticket #373 (Paramaterize how to calculate the average in Quantile Normalization) created by Peter

May 24, 2008:

7:47 PM Ticket #372 (version.h is not found by doxygen (when using VPATH)) created by Peter
Doxygen only look for src in $(top_srsdir)/yat. However, version.h
8:07 AM Changeset [1328] by Peter
added missing docs
7:53 AM Ticket #352 (modify FLAGS when configure option --with-gsl-prefix) closed by Peter
fixed: fixed in [1327]
7:53 AM Changeset [1327] by Peter
fixes #352
6:12 AM Changeset [1326] by Peter
correcting Id keyword
6:07 AM Changeset [1325] by Peter
adding info on boost
6:03 AM Ticket #370 (using boost) closed by Peter
fixed: As of r1324 yat requires Boost
6:00 AM Changeset [1324] by Peter
Boost is now required (ticket:370). Boost 1.33 is required, which is a …
2:25 AM Changeset [1323] by Peter
change template name to RandomAccessIterator? to clarify that …

May 23, 2008:

5:54 PM Changeset [1322] by Peter
corrected docs
4:21 PM Ticket #371 (remove ax_prefix_config_h.m4) created by Peter
It was introduced in r1319 and should in principle have been removed …
4:14 PM Changeset [1321] by Peter
Basically reverting r1319. I was not happy with the macro, so create …

May 22, 2008:

9:03 PM Changeset [1320] by Peter
vector -> Vector in docs
4:37 PM Ticket #370 (using boost) created by Peter
Working on ticket:369 I realize that implementing an iterator is …

May 21, 2008:

6:06 PM Ticket #355 (installation of config.h is flawed) closed by Peter
fixed: (in [1319]) config.h is no longer installed. Therefore, do not include …
6:03 PM Changeset [1319] by Peter
config.h is no longer installed. Therefore, do not include config.h …
5:25 PM Changeset [1318] by Peter
fixed compilation error
2:23 PM Changeset [1317] by Peter
moving implementation of percentile to a functor: Percentiler

May 20, 2008:

9:49 PM Changeset [1316] by Peter
removed include
6:32 AM Ticket #369 (create unweighted iterator from weighted iterator) created by Peter
needed for ticket:366 related to ticket:368 and ticket:391 A …
6:14 AM Ticket #368 (create weighted iterator from two unweighted iterators) created by Peter
related to ticket:369 Implement a weighted iterator that holds two …
1:03 AM Ticket #367 (preprocessor guards for deprecated functions) created by Peter
I would like to have preprocessor guards to surround deprecated …
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