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9:21 PM DownloadPage edited by Peter: specify to GPL v2 (diff)
3:17 AM Changeset [1360] by Peter: working on ticket #214
3:13 AM Ticket #389 (failure in matrix_lookup_test) created by Peter: I tried to add a line […] in matrix_lookup_test.cc in order to …
2:01 AM Changeset [1359] by Peter: just to make the highlighting in emacs look prettier

12:22 AM Ticket #388 (use fifth argument [action-if-cross-compiling] in AC_RUN_IF_ELSE) closed by Peter: fixed: fixed in [1358]
12:21 AM Changeset [1358] by Peter: fixes #338 - runtime tests for quiet_NaN and infinity are not …

10:43 PM Changeset [1357] by Peter: adding missing props
3:42 PM Ticket #388 (use fifth argument [action-if-cross-compiling] in AC_RUN_IF_ELSE) created by Peter: We use macro AC_RUN_IF_ELSE twice in configure.ac to test for …
1:20 AM Ticket #353 (create yat-config script) closed by Peter: fixed: (In [1356]) fixed a yat.pc file
1:19 AM Changeset [1356] by Peter: fixes #533 - added creation and installation of a yat.pc file

6:39 PM Changeset [1355] by Peter: adding acknowledgment to apr
6:07 PM Changeset [1354] by Peter: minor improvement
5:16 PM Changeset [1353] by Peter: adding text on infinity in requirements
5:02 PM Changeset [1352] by Peter: fixing so distcheck passes through
3:54 PM Changeset [1351] by Peter: adding missing properties

7:04 AM Changeset [1350] by Peter: using @PACKAGE@ and adding line 'Report bugs to...' in yat-config
6:59 AM Ticket #385 (AX_PATH_GSL fails if gslcblas is not available) closed by Peter: fixed: fixed in [1349]
6:57 AM Changeset [1349] by Peter: fixing #385 - setting env var GSL_CBLAS_LIB when gslcblas is not used
6:53 AM Ticket #376 (configure reports flag info that may be misleading) closed by Peter: fixed: fixed in [1348]
6:49 AM Changeset [1348] by Peter: adding a yat-config script (fixes #353) also fixes ticket #376 by …
4:40 AM Ticket #387 (allow to disable configure run-time checks) created by Peter: We have a couple of run-time checks in configure, for instance: …
4:31 AM Ticket #386 (AX_PATH_GSL doesn't check for GSL header files) created by Peter: I tried removing gsl header files, and the macro goes through without …
4:02 AM Ticket #385 (AX_PATH_GSL fails if gslcblas is not available) created by Peter: I tried removing gslcblas and then AX_PATH_GSL fails with these …

3:37 PM Ticket #384 (what are the dependcy on 'make doc') created by Peter: related to [1347] see comment in [1347], but basically it seems like …
3:34 PM Changeset [1347] by Peter: deleting doxygen.error in 'make clean'. The flaw was detecting by …

11:00 PM Changeset [1346] by Peter: adding some stuff in version test
9:23 PM Ticket #375 (send dogygen error message to a file) closed by Peter: fixed: sorry should be [1345]
9:21 PM Ticket #372 (version.h is not found by doxygen (when using VPATH)) closed by Peter: fixed: fixed in [1344]
9:20 PM Changeset [1345] by Peter: send doxygen error to a file - fixes #375
9:15 PM Changeset [1344] by Peter: let doxygen parse in builddir as well

7:05 PM Ticket #383 (why both operator() and operator[] in Target?) closed by Peter: fixed: deprecated Target::operator[] in [1343] since it is only calling …
7:03 PM Changeset [1343] by Peter: deprecating Target::operator[]
6:47 PM Ticket #383 (why both operator() and operator[] in Target?) created by Peter
6:46 PM Ticket #382 (Create an Index object from a string in Target class) created by Peter: The class could be used to easily get which samples that belong to …
6:09 PM Changeset [1342] by Peter: fixing doxygen problems

8:51 PM Changeset [1340] by Peter: fixing so declarations match implementations

1:58 AM Changeset [1339] by Peter: Adding \since tag for new classes and functions
12:13 AM Changeset [1338] by Peter: updating docs

4:59 PM Ticket #381 (Generalize Kernel_MEV) created by Peter: A matrix that calculates its element on the fly. It holds two ranges: …

9:38 PM Ticket #380 (Default argument in OptionArg) created by Peter: Does it make sense to be able to set a default argument, i.e., if the …
8:36 PM Ticket #379 (Document how output created by OptionHelp) created by Peter: Give an example and explain how it can be tailored using the member …

11:46 PM Changeset [1333] by Peter: updating copyright
11:37 PM Ticket #378 (FileUtil::exists() fails on large files) closed by Peter: fixed: in [1332]
11:36 PM Changeset [1332] by Peter: fixes #378

2:48 AM Changeset [1331] by Peter: oops mistake in previous commit
2:33 AM Changeset [1330] by Peter: update LT_VERSION (a++) since implementation (in FileUtil?) was …
2:02 AM Ticket #378 (FileUtil::exists() fails on large files) created by Peter: Calling FileUtil::exists() on a large (37Gb) file results in […] …
12:55 AM Changeset [1329] by Peter: Fixed bug with errno. errno is int and taking string+int is not healthy.

10:46 PM Ticket #377 (class for nucleotides) created by Peter: I need some utilities for dealing with sequences of nucleotides both …
10:12 PM Ticket #376 (configure reports flag info that may be misleading) created by Peter: In end of confiugure.ac we have these lines […] giving a summary …
4:46 PM Ticket #375 (send dogygen error message to a file) created by Peter: related to ticket:374 and ticket:162 Currently the error message is …
11:09 AM Ticket #233 (Links to documentation are broken) closed by Jari Häkkinen: fixed: Fixed, the trunk docs are not up to date.
10:58 AM Ticket #374 (Make documentation cron job report failures through email to maintainer.) created by Jari Häkkinen: related to ticket:375

6:55 PM Ticket #233 (Links to documentation are broken) reopened by Peter: Link to trunk docs is broken again.

5:50 PM Ticket #373 (Paramaterize how to calculate the average in Quantile Normalization) created by Peter

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