Timeline



Apr 28, 2009:

8:10 PM Changeset [1923] by Peter
refs #510 - avoid problem with empty lines

Apr 25, 2009:

1:22 AM Ticket #536 (sorting range with NaNs does not behave as desired) created by Peter
spin-off from ticket:535 This ticket is for the 0.6 implementation …

Apr 24, 2009:

11:48 PM Changeset [1922] by Peter
working on ticket 510 (refs #510)
10:37 PM Ticket #535 (qQuantileNormalization does not work with missing values represened ...) created by Jari Häkkinen
related to ticket:536 The reason for this that the weighted normalize …
10:01 PM Changeset [1921] by Jari Häkkinen
Improved docs?
9:23 PM Ticket #393 (precision is hard-coded to 12 in output operator for Matrix and friends) closed by Peter
fixed: (In [1920]) fixes #393
9:23 PM Changeset [1920] by Peter
fixes #393
9:01 PM Changeset [1919] by Peter
fixes #519
9:01 PM Ticket #519 (ostream.precision should be restored in output operators) closed by Peter
fixed: (In [1919]) fixes #519
8:43 PM Changeset [1918] by Peter
in tests, only create autotool files when autoconf is in list of …
8:19 PM Changeset [1917] by Peter
align error message
8:10 PM Changeset [1916] by Peter
activate message about gslcblas. refs #349
8:04 PM Changeset [1915] by Peter
fixes #534
8:04 PM Ticket #534 ("./configure --without-boost" returns "old boost found") closed by Peter
fixed: (In [1915]) fixes #534
7:52 PM Changeset [1914] by Peter
Using ACX_BLAS macro for blas detection. The behavior will likely be a …
7:52 PM Tickets #349,​524 batch updated by Peter
fixed: (In [1914]) Using ACX_BLAS macro for blas detection. The behavior will …
7:39 PM Ticket #534 ("./configure --without-boost" returns "old boost found") created by Peter
Running […] results in […] I think we should check for that …

Apr 23, 2009:

11:53 PM Changeset [1913] by Peter
fixes #533
11:53 PM Ticket #533 (CommandLine parse(argc, argv) gives bus error if I I have no write ...) closed by Peter
fixed: (In [1913]) fixes #533
11:38 PM Ticket #531 (creation of doxygen.mk files is not portable) closed by Peter
fixed
7:57 PM Changeset [1912] by Peter
refs #531 - another attempt to make this work on OSX
7:30 PM Changeset [1911] by Peter
refs #531 - less verbose during 'make doxygen.mk'
7:26 PM Ticket #532 (m4 files are missing in list of requirements in yat_add*test.sh) closed by Peter
fixed: (In [1910]) fixes #532
7:26 PM Changeset [1910] by Peter
fixes #532
7:09 PM Changeset [1909] by Peter
an attempt to make creation of doxygen.mk more portable. refs #531

Apr 22, 2009:

10:27 PM Ticket #533 (CommandLine parse(argc, argv) gives bus error if I I have no write ...) created by Jari Häkkinen
In the first example I try to create a file in a directory not owned …

Apr 21, 2009:

7:06 PM Ticket #532 (m4 files are missing in list of requirements in yat_add*test.sh) created by Peter
We do list the direct requirement that is the yat_add*.m4 file, but …
7:03 PM Ticket #531 (creation of doxygen.mk files is not portable) created by Peter
It has been reported that doxygen.mk files are incorrect on some …

Apr 18, 2009:

12:02 AM Ticket #385 (AX_PATH_GSL fails if gslcblas is not available) closed by Jari Häkkinen
wontfix

Apr 17, 2009:

10:15 PM Changeset [1908] by Jari Häkkinen
Fixes #528
10:15 PM Ticket #528 (make check fails in 0.5-stable branch) closed by Jari Häkkinen
fixed: (In [1908]) Fixes #528
7:51 PM Changeset [1907] by Peter
fixes #530. output doxygen version in documentation_test.sh. also …
7:51 PM Ticket #530 (add version output of doxygen in documentation_test.sh) closed by Peter
fixed: (In [1907]) fixes #530. output doxygen version in …
7:40 PM Changeset [1906] by Peter
closes #412
7:40 PM Ticket #412 (Doxygen - Build redundancy) closed by Peter
fixed: (In [1906]) closes #412
6:46 PM Tickets #501,​438 batch updated by Peter
fixed: (In [1905]) Revised make dependencies for generating doxygen docs …
6:46 PM Changeset [1905] by Peter
Revised make dependencies for generating doxygen docs (fixes #438 and …
3:52 AM Ticket #530 (add version output of doxygen in documentation_test.sh) created by Peter
This is useful when getting bug reports.
12:33 AM Changeset [1904] by Jari Häkkinen
Ask gsl where header files are located. Fixed strange formatting.
12:31 AM Ticket #529 (Document important configure options) created by Jari Häkkinen
Doing ./configure --help reveals among other things […] The above …
12:09 AM Ticket #528 (make check fails in 0.5-stable branch) created by Jari Häkkinen
[…] Verbose ./test/documentation_test.sh -v […]
12:01 AM Ticket #527 (Cannot run configure on 64-bit CentOS) closed by Jari Häkkinen
fixed: (In [1903]) Fixes #527 and addresses #511.
12:01 AM Changeset [1903] by Jari Häkkinen
Fixes #527 and addresses #511.

Apr 16, 2009:

11:47 PM Changeset [1902] by Jari Häkkinen
Addresses #527. Issue i) is resolved.
11:46 PM Ticket #527 (Cannot run configure on 64-bit CentOS) created by Jari Häkkinen
Related #511. The problem is two-fold. i) I am using atlas and the …
6:03 PM Changeset [1901] by Peter
move test dirs to its own directory in order to avoid polluting the …
5:49 PM Changeset [1900] by Peter
added dependency so configure is rerun in test packages if yat-config …
5:41 PM Changeset [1899] by Peter
change semantics in test (in case someone looks in tests for examples).
5:11 PM Ticket #523 (add support for option --libs-without-cblas in yat-config) closed by Peter
fixed: (In [1898]) fixes #523
5:11 PM Changeset [1898] by Peter
fixes #523
12:06 AM Ticket #522 (yat-config should honor environment variable YAT_CBLAS_LIB) closed by Peter
fixed: (In [1897]) fixes #522. Introduced a variable YAT_PRIMARY_LIBS that is …
12:06 AM Changeset [1897] by Peter
fixes #522. Introduced a variable YAT_PRIMARY_LIBS that is YAT_LIBS …

Apr 15, 2009:

9:37 PM Changeset [1896] by Peter
prefer using macro when it exists
9:11 PM Changeset [1895] by Peter
fixes #386. Add test that gsl header files are available. Add …
9:11 PM Ticket #386 (AX_PATH_GSL doesn't check for GSL header files) closed by Peter
fixed: (In [1895]) fixes #386. Add test that gsl header files are available. …
8:14 PM Changeset [1894] by Peter
fixes #526. Moved gsl tests to its own file, 'm4/yat_gsl.m4'
8:14 PM Ticket #526 (configure says I have gsl installed (but too old) although I just ...) closed by Peter
fixed: (In [1894]) fixes #526. Moved gsl tests to its own file, 'm4/yat_gsl.m4'
12:48 AM Ticket #526 (configure says I have gsl installed (but too old) although I just ...) created by Peter
Working on ticket:386 the third argument in AX_PATH_GSL caught my …

Apr 14, 2009:

4:50 PM Changeset [1893] by Peter
remove example that will not work with yat 0.6. refs #525
1:00 AM Ticket #525 (update macros in yat.m4 to reflect that libyat no longer has a ...) created by Peter
Spin-off from #518 Check that they work. YAT_LA_FILE is incorrect …
12:40 AM Ticket #524 (add configure option --with-cblas in yat's configure) created by Peter
spin-off from #518 related to #349 (that is #349 would solve this …
12:37 AM Ticket #523 (add support for option --libs-without-cblas in yat-config) created by Peter
spin-off from ticket:518
12:35 AM Ticket #522 (yat-config should honor environment variable YAT_CBLAS_LIB) created by Peter
spin-off from ticket:518
12:33 AM Changeset [1892] by Peter
Removed dependency to cblas in libyat. There are three new make …

Apr 13, 2009:

7:03 PM Ticket #521 (deprecate OptionInFile and OptionOutFile) created by Peter
Don't forget to add blurp in NEWS. Replace classes in example in docs …
7:01 PM Ticket #520 (A class to redirect streams easily.) created by Peter
A use case would be […] after which all output to std::cerr is …

Apr 12, 2009:

5:11 PM Ticket #412 (Doxygen - Build redundancy) reopened by Jari Häkkinen
5:11 PM Ticket #412 (Doxygen - Build redundancy) closed by Jari Häkkinen
invalid
5:10 PM Ticket #394 (libtool: install: warning: remember to run `libtool --finish) closed by Peter
invalid: Not a yat issue.
5:07 PM Ticket #348 (AveragerPairWeighted::correlation return inf and -inf) closed by Peter
invalid
4:50 PM Ticket #169 (Use MTL for Vector and Matrix) closed by Jari Häkkinen
wontfix
3:07 AM Ticket #519 (ostream.precision should be restored in output operators) created by Peter
related to ticket:393 In some operator<< e.g. Matrix the precision …
3:00 AM Ticket #380 (Default argument in OptionArg) closed by Peter
fixed: Since yat 0.5 there are functions value(1) and a print_arg(1), which …

Apr 10, 2009:

2:55 PM Ticket #385 (AX_PATH_GSL fails if gslcblas is not available) reopened by Jari Häkkinen
Resolution in changeset:1349 pollutes users environment. Avoid this.
12:37 AM Ticket #518 (choosing cblas - when and how?) created by Peter
Daughter tickets: #522 #523 #524 #525 This is not an issue as long as …

Apr 8, 2009:

4:59 AM Ticket #517 (Improve docs on Option classes) created by Peter
Especially OptionInFile? and OptionOutFile? but also go through their …

Apr 2, 2009:

11:48 PM Changeset [1891] by Peter
refs #454 - forgot the last file in r1890
11:43 PM Changeset [1890] by Peter
fixes #454 - throw exception when detecting funky dimensions
11:43 PM Ticket #454 (Matrix(0, 42) or its transpose Matrix(42, 0) is not allowed) closed by Peter
fixed: (In [1890]) fixes #454 - throw exception when detecting funky dimensions
1:53 PM Ticket #516 (Make Matrix and Vector usable with std::algorithm) closed by Jari Häkkinen
invalid: Sorry, I retract this ticket ... small stupid syntax error …
1:00 PM Ticket #516 (Make Matrix and Vector usable with std::algorithm) created by Jari Häkkinen
I\d like to be able to do …

Apr 1, 2009:

3:57 PM Ticket #515 (Why isn't theplu::yat::utility::Index a derived class of ...) created by Jari Häkkinen
I need push_back and reserve functionality ... but the Index class …

Mar 31, 2009:

11:19 PM Ticket #351 (Estimating parameter p (and confidence interval) in binomial distribution) closed by Peter
wontfix: This is provided by boost 1.35: …
9:21 PM Changeset [1889] by Peter
corrected example - do not call program_name() prior parse().
9:13 PM Changeset [1888] by Peter
updating copyright years
7:38 PM Ticket #512 (use doxygen tag \relates) closed by Peter
fixed: (In [1887]) closes #512. added relates tag in namespace utility.
7:38 PM Changeset [1887] by Peter
closes #512. added relates tag in namespace utility.
7:02 PM Changeset [1886] by Peter
refs #512. added relates tag in namespace statistics.
6:49 PM Changeset [1885] by Peter
refs #512. added relates tag in namespace regression.
6:20 PM Ticket #514 (concept: Weighted Iterator or unweighted with value type convertible ...) created by Peter
The requirement: "Weighted Iterator or unweighted with value type …
6:12 PM Changeset [1884] by Peter
aclocal is most often called via autoreconf, so removed docs on how to …
6:08 PM Changeset [1883] by Peter
refs #512. added relates and relatesalso tags on some free functions …
3:36 PM Ticket #513 (Documentation of qQuantileNormalization does not clearly explain what ...) created by Jari Häkkinen
I assume that the target is set in the construction of the normalizer …
5:51 AM Ticket #512 (use doxygen tag \relates) created by Peter
Use \relates or perhaps \relatesalso on free functions that are …

Mar 30, 2009:

11:24 PM Changeset [1882] by Peter
updated example of class CommandLine?
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