Timeline



May 14, 2009:

9:07 PM Ticket #542 (behavior and documentation of SVM::predict are not consistent) created by Peter
Documentation says that prediction output is the geometrical distance …

May 13, 2009:

8:04 PM Changeset [1977] by Peter
remove obsolete error message. If we don't have a specialized libblas …
5:48 PM Changeset [1976] by Peter
- acx_blas.m4 reversing back to pristine version - configure.ac …

May 12, 2009:

5:55 PM Changeset [1975] by Peter
fixes #538. Move skip to appear earlier. Test is successful as root
5:55 PM Ticket #538 (commandline_test fails when running as root) closed by Peter
fixed: (In [1975]) fixes #538. Move skip to appear earlier. Test is …
5:36 PM Changeset [1974] by Peter
refs #538 - modified test as discussed. Haven't tested that it works …
4:52 PM Ticket #539 (including uninstalled <yat/utility/deprecate.h> fails in VPATH build) closed by Peter
fixed: (In [1973]) fixes #539 added more details include paths in yat-config …
4:52 PM Changeset [1973] by Peter
fixes #539 added more details include paths in yat-config --cppflags …
3:27 PM Changeset [1972] by Peter
avoid compiler warning 'variable not used'

May 11, 2009:

11:58 PM Ticket #541 (access to prediction on training data in EnsembleBuilder) created by Peter
Just like function validate gives validation output I would like to …
11:41 PM Ticket #540 (EnsembleBuilder::validate triggers assert when EB is built with one ...) created by Peter
This is only a problem when yat is compiled without PP flag …
10:42 PM Changeset [1971] by Peter
adding missing since tags
9:07 PM Ticket #539 (including uninstalled <yat/utility/deprecate.h> fails in VPATH build) created by Peter
Building against uninstalled yat tree which is configured with …
5:39 PM Changeset [1970] by Peter
adding specialization less_nan<DataWeight?>
4:44 PM Changeset [1969] by Peter
fixing compilation error
4:39 PM Changeset [1968] by Peter
refs #538 - makes diagnosis more detailed.

May 8, 2009:

11:46 PM Changeset [1967] by Peter
refs #536 using less_nan in Vector sort
11:39 PM Changeset [1966] by Peter
adding functor less_nan (refs #536)
9:44 PM Changeset [1965] by Peter
remove stray character
7:10 PM Changeset [1964] by Peter
mention float, double and long double in docs of Log and Exp functors.
7:02 PM Changeset [1963] by Peter
removing files not needed anymore since we removed support for 'make …
5:51 PM Changeset [1962] by Peter
refs #538 - adding missing output at failure.
11:42 AM Ticket #538 (commandline_test fails when running as root) created by Jari Häkkinen
[…]

May 7, 2009:

10:18 PM Changeset [1961] by Peter
refs #349 - the patch as discussed
10:04 PM Changeset [1960] by Peter
enable-svn-support requires md5 tool
9:57 PM Changeset [1959] by Peter
documentation test no issues 'make doc' rather than 'make html'. The …
9:42 PM Changeset [1958] by Peter
remove support for make svn-clean
9:39 PM Changeset [1957] by Peter
adding check for which program to use for creation of md5 files
6:08 PM Changeset [1956] by Peter
adding dummy target release
5:36 PM Changeset [1955] by Jari Häkkinen
Reverting changes commited by mistake in changeset:1954
5:30 PM Changeset [1954] by Jari Häkkinen
Merged patch release 0.5.3 to the trunk. Delta 0.5.3 - 0.5.2
5:28 PM Ticket #349 (use autoconf macro acx_blas?) reopened by Jari Häkkinen
configure fails on my machine. The acx_blas macro does not work for me …
5:09 PM Changeset [1953] by Jari Häkkinen
Removed cut-n-paste trace.
5:04 PM Milestone yat 0.5.3 completed
This is a bug fix release. …
5:02 PM WikiStart edited by Jari Häkkinen
Releasing 0.5.3 (diff)
5:01 PM DownloadPage edited by Jari Häkkinen
Releasing 0.5.3 (diff)
4:57 PM yat-0.5.3.tar.gz.MD5 attached to DownloadPage by Jari Häkkinen
4:57 PM yat-0.5.3.tar.gz attached to DownloadPage by Jari Häkkinen
4:53 PM Changeset [1952] by Jari Häkkinen
Changes for future release 0.5.4
4:47 PM Changeset [1951] by Jari Häkkinen
Tagging version 0.5.3
12:48 PM Changeset [1950] by Jari Häkkinen
updating copyright statements
11:24 AM Changeset [1949] by Jari Häkkinen
Preparing release 0.5.3

May 6, 2009:

11:48 PM Ticket #535 (qQuantileNormalization does not work with missing values represened ...) closed by Jari Häkkinen
fixed: Resolved since changeset:1948
6:30 PM Ticket #263 (matrix and iterators) closed by Peter
fixed: iterators have been available (at least) since 0.4, so why is this …
5:02 PM Changeset [1948] by Jari Häkkinen
Addresses #535. No need to replace NaNs? in the unweighted case. Peter, …
4:23 PM Changeset [1947] by Jari Häkkinen
Addresses #535. NaNs? are replaced with Inf in sorting in …
3:58 PM Changeset [1946] by Jari Häkkinen
Addresses #535. Another fix for the poor implentation in …
3:46 PM Changeset [1945] by Jari Häkkinen
Addresses #535. Changeset:1943 contained defect test for the issue ... …
2:09 PM Changeset [1944] by Jari Häkkinen
Fixes #513 and fixed spelling.
2:09 PM Ticket #513 (Documentation of qQuantileNormalization does not clearly explain what ...) closed by Jari Häkkinen
fixed: (In [1944]) Fixes #513 and fixed spelling.
11:44 AM Changeset [1943] by Jari Häkkinen
Addresses #535. Added a test that fails on nan

May 5, 2009:

12:03 AM Changeset [1942] by Peter
fixes #537
12:03 AM Ticket #537 (repeated make clean fails) closed by Peter
fixed: (In [1942]) fixes #537

May 4, 2009:

11:42 PM Ticket #537 (repeated make clean fails) created by Peter
[…] doxygen.mk should be treated as Makefiles, i.e., removed at …
11:29 PM Ticket #497 (distinguish LIBS and LIBS.private in yat.pc) closed by Peter
invalid: yat is directly dependent on two packages: GSL and Boost. We do not …
11:23 PM Ticket #435 (avoid using -m64 if possible) closed by Peter
fixed: As of r1914 we use ACX_BLAS and there is no -m64 flag.
11:19 PM Ticket #347 (#includes: "yat/utility/utility.h" or "../utility/utility.h") closed by Peter
wontfix: Include "dir/file" would not work because preprocessor would not find …
8:49 PM Changeset [1941] by Peter
check consistency between configure.ac and README regarding boost and …
8:48 PM Changeset [1940] by Peter
mention --libs-without-cblas

May 1, 2009:

6:58 PM Changeset [1939] by Peter
fixes #529
6:58 PM Ticket #529 (Document important configure options) closed by Peter
fixed: (In [1939]) fixes #529
4:52 PM Changeset [1938] by Peter
corrected detection of failured gsl test
4:39 PM Changeset [1937] by Peter
mention in NEWS that blas is not coded into libyat.so and libyat.la
12:14 AM Changeset [1936] by Peter
silent rule for doxygen.m4 in yat/yat
12:08 AM Changeset [1935] by Peter
turn on traces in verbose mode
12:01 AM Changeset [1934] by Peter
fix so we change directory to test_dir after find and update acinclude.m4

Apr 30, 2009:

11:56 PM Changeset [1933] by Peter
shell tests cannot be run from anywhere, so avoid insinuating that
11:04 PM Changeset [1932] by Peter
add snippet about environment variable YAT_CBLAS_LIB
9:36 PM Ticket #511 (linking statically against atlas fails on Fedora) closed by Peter
fixed: (In [1931]) adding a test for static linking with libyat. closes #511
9:36 PM Changeset [1931] by Peter
adding a test for static linking with libyat. closes #511
8:06 PM Ticket #510 (funtion creating vector<vector<T>> from istream) closed by Peter
fixed: (In [1930]) avoid copying in MatrixWeighted??(istream), i.e., avoid use …
8:06 PM Ticket #535 (qQuantileNormalization does not work with missing values represened ...) reopened by Peter
incorrect message in r1930
8:04 PM Changeset [1930] by Peter
avoid copying in MatrixWeighted?(istream), i.e., avoid use of …
8:04 PM Ticket #535 (qQuantileNormalization does not work with missing values represened ...) closed by Peter
fixed: (In [1930]) avoid copying in MatrixWeighted?(istream), i.e., avoid use …
7:39 PM Changeset [1929] by Peter
refs #510. using load function in Vector(istream) constructor
6:48 PM Changeset [1928] by Peter
refs #510 - allow function 'load' to ignore empty lines and check that …
5:16 PM Changeset [1927] by Peter
refs #510 using load function in Matrix istream constructor. Behavior …
4:02 PM Changeset [1926] by Peter
Ignoring zero weights in Percentiler so algorithm works also when …

Apr 29, 2009:

6:09 PM Changeset [1925] by Peter
adding missing includes
5:43 PM Changeset [1924] by Peter
Fixing NaN treatment in BectorMutable::sort (refs #535). The plan with …

Apr 28, 2009:

8:10 PM Changeset [1923] by Peter
refs #510 - avoid problem with empty lines

Apr 25, 2009:

1:22 AM Ticket #536 (sorting range with NaNs does not behave as desired) created by Peter
spin-off from ticket:535 This ticket is for the 0.6 implementation …

Apr 24, 2009:

11:48 PM Changeset [1922] by Peter
working on ticket 510 (refs #510)
10:37 PM Ticket #535 (qQuantileNormalization does not work with missing values represened ...) created by Jari Häkkinen
related to ticket:536 The reason for this that the weighted normalize …
10:01 PM Changeset [1921] by Jari Häkkinen
Improved docs?
9:23 PM Ticket #393 (precision is hard-coded to 12 in output operator for Matrix and friends) closed by Peter
fixed: (In [1920]) fixes #393
9:23 PM Changeset [1920] by Peter
fixes #393
9:01 PM Changeset [1919] by Peter
fixes #519
9:01 PM Ticket #519 (ostream.precision should be restored in output operators) closed by Peter
fixed: (In [1919]) fixes #519
8:43 PM Changeset [1918] by Peter
in tests, only create autotool files when autoconf is in list of …
8:19 PM Changeset [1917] by Peter
align error message
8:10 PM Changeset [1916] by Peter
activate message about gslcblas. refs #349
8:04 PM Changeset [1915] by Peter
fixes #534
8:04 PM Ticket #534 ("./configure --without-boost" returns "old boost found") closed by Peter
fixed: (In [1915]) fixes #534
7:52 PM Changeset [1914] by Peter
Using ACX_BLAS macro for blas detection. The behavior will likely be a …
7:52 PM Tickets #349,​524 batch updated by Peter
fixed: (In [1914]) Using ACX_BLAS macro for blas detection. The behavior will …
7:39 PM Ticket #534 ("./configure --without-boost" returns "old boost found") created by Peter
Running […] results in […] I think we should check for that …

Apr 23, 2009:

11:53 PM Changeset [1913] by Peter
fixes #533
11:53 PM Ticket #533 (CommandLine parse(argc, argv) gives bus error if I I have no write ...) closed by Peter
fixed: (In [1913]) fixes #533
11:38 PM Ticket #531 (creation of doxygen.mk files is not portable) closed by Peter
fixed
7:57 PM Changeset [1912] by Peter
refs #531 - another attempt to make this work on OSX
7:30 PM Changeset [1911] by Peter
refs #531 - less verbose during 'make doxygen.mk'
7:26 PM Ticket #532 (m4 files are missing in list of requirements in yat_add*test.sh) closed by Peter
fixed: (In [1910]) fixes #532
7:26 PM Changeset [1910] by Peter
fixes #532
7:09 PM Changeset [1909] by Peter
an attempt to make creation of doxygen.mk more portable. refs #531

Apr 22, 2009:

10:27 PM Ticket #533 (CommandLine parse(argc, argv) gives bus error if I I have no write ...) created by Jari Häkkinen
In the first example I try to create a file in a directory not owned …

Apr 21, 2009:

7:06 PM Ticket #532 (m4 files are missing in list of requirements in yat_add*test.sh) created by Peter
We do list the direct requirement that is the yat_add*.m4 file, but …
7:03 PM Ticket #531 (creation of doxygen.mk files is not portable) created by Peter
It has been reported that doxygen.mk files are incorrect on some …

Apr 18, 2009:

12:02 AM Ticket #385 (AX_PATH_GSL fails if gslcblas is not available) closed by Jari Häkkinen
wontfix

Apr 17, 2009:

10:15 PM Changeset [1908] by Jari Häkkinen
Fixes #528
10:15 PM Ticket #528 (make check fails in 0.5-stable branch) closed by Jari Häkkinen
fixed: (In [1908]) Fixes #528
7:51 PM Changeset [1907] by Peter
fixes #530. output doxygen version in documentation_test.sh. also …
7:51 PM Ticket #530 (add version output of doxygen in documentation_test.sh) closed by Peter
fixed: (In [1907]) fixes #530. output doxygen version in …
7:40 PM Changeset [1906] by Peter
closes #412
7:40 PM Ticket #412 (Doxygen - Build redundancy) closed by Peter
fixed: (In [1906]) closes #412
6:46 PM Tickets #501,​438 batch updated by Peter
fixed: (In [1905]) Revised make dependencies for generating doxygen docs …
6:46 PM Changeset [1905] by Peter
Revised make dependencies for generating doxygen docs (fixes #438 and …
3:52 AM Ticket #530 (add version output of doxygen in documentation_test.sh) created by Peter
This is useful when getting bug reports.
12:33 AM Changeset [1904] by Jari Häkkinen
Ask gsl where header files are located. Fixed strange formatting.
12:31 AM Ticket #529 (Document important configure options) created by Jari Häkkinen
Doing ./configure --help reveals among other things […] The above …
12:09 AM Ticket #528 (make check fails in 0.5-stable branch) created by Jari Häkkinen
[…] Verbose ./test/documentation_test.sh -v […]
12:01 AM Ticket #527 (Cannot run configure on 64-bit CentOS) closed by Jari Häkkinen
fixed: (In [1903]) Fixes #527 and addresses #511.
12:01 AM Changeset [1903] by Jari Häkkinen
Fixes #527 and addresses #511.

Apr 16, 2009:

11:47 PM Changeset [1902] by Jari Häkkinen
Addresses #527. Issue i) is resolved.
11:46 PM Ticket #527 (Cannot run configure on 64-bit CentOS) created by Jari Häkkinen
Related #511. The problem is two-fold. i) I am using atlas and the …
6:03 PM Changeset [1901] by Peter
move test dirs to its own directory in order to avoid polluting the …
5:49 PM Changeset [1900] by Peter
added dependency so configure is rerun in test packages if yat-config …
5:41 PM Changeset [1899] by Peter
change semantics in test (in case someone looks in tests for examples).
5:11 PM Ticket #523 (add support for option --libs-without-cblas in yat-config) closed by Peter
fixed: (In [1898]) fixes #523
5:11 PM Changeset [1898] by Peter
fixes #523
12:06 AM Ticket #522 (yat-config should honor environment variable YAT_CBLAS_LIB) closed by Peter
fixed: (In [1897]) fixes #522. Introduced a variable YAT_PRIMARY_LIBS that is …
12:06 AM Changeset [1897] by Peter
fixes #522. Introduced a variable YAT_PRIMARY_LIBS that is YAT_LIBS …

Apr 15, 2009:

9:37 PM Changeset [1896] by Peter
prefer using macro when it exists
9:11 PM Changeset [1895] by Peter
fixes #386. Add test that gsl header files are available. Add …
9:11 PM Ticket #386 (AX_PATH_GSL doesn't check for GSL header files) closed by Peter
fixed: (In [1895]) fixes #386. Add test that gsl header files are available. …
8:14 PM Changeset [1894] by Peter
fixes #526. Moved gsl tests to its own file, 'm4/yat_gsl.m4'
8:14 PM Ticket #526 (configure says I have gsl installed (but too old) although I just ...) closed by Peter
fixed: (In [1894]) fixes #526. Moved gsl tests to its own file, 'm4/yat_gsl.m4'
12:48 AM Ticket #526 (configure says I have gsl installed (but too old) although I just ...) created by Peter
Working on ticket:386 the third argument in AX_PATH_GSL caught my …

Apr 14, 2009:

4:50 PM Changeset [1893] by Peter
remove example that will not work with yat 0.6. refs #525
1:00 AM Ticket #525 (update macros in yat.m4 to reflect that libyat no longer has a ...) created by Peter
Spin-off from #518 Check that they work. YAT_LA_FILE is incorrect …
12:40 AM Ticket #524 (add configure option --with-cblas in yat's configure) created by Peter
spin-off from #518 related to #349 (that is #349 would solve this …
12:37 AM Ticket #523 (add support for option --libs-without-cblas in yat-config) created by Peter
spin-off from ticket:518
12:35 AM Ticket #522 (yat-config should honor environment variable YAT_CBLAS_LIB) created by Peter
spin-off from ticket:518
12:33 AM Changeset [1892] by Peter
Removed dependency to cblas in libyat. There are three new make …
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