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12:56 PM Ticket #724 (regression in NeedlemanWunsch) closed by Peter: fixed: (In [2847]) Fixes #724. Adding another test for NeedlemanWunsch?. Fix …
12:56 PM Changeset [2847] by Peter: Fixes #724. Adding another test for NeedlemanWunsch?. Fix bug in NW …
11:30 AM Changeset [2846] by Peter: Merged r2845 into 0.9.x branch and marked alignment.test as XFAIL. …
11:21 AM Changeset [2845] by Peter: Extend test for NeedlemanWunsch? and check alignment score between …
4:04 AM Ticket #724 (regression in NeedlemanWunsch) created by Peter: Comparing speclust output using yat 0.8.2 and yat 0.9 I noticed a …

1:38 PM Ticket #723 (CommandLine accepts passed '--no-foo') closed by Peter: fixed: (In [2844]) add test for #723 and implement a fix. Fixes #723
1:38 PM Changeset [2844] by Peter: add test for #723 and implement a fix. Fixes #723
3:43 AM Ticket #723 (CommandLine accepts passed '--no-foo') created by Peter: Surprisingly, CommandLine? accepts passed --no-foo but doesn't accept …
2:38 AM Ticket #722 (yat.pc misses boost libs) closed by Peter: fixed: (In [2843]) fixes #722
2:38 AM Changeset [2843] by Peter: fixes #722
1:38 AM Ticket #722 (yat.pc misses boost libs) created by Peter: Boost libs are missing in the yat.pc file. Should either be in …

6:52 AM Changeset [2842] by Peter: remove todo doxygen tags
3:38 AM Ticket #721 (documentation does not get installed) closed by Peter: fixed: (In [2841]) fixes #721. fix install-html-local rule and add a …
3:38 AM Changeset [2841] by Peter: fixes #721. fix install-html-local rule and add a install-check rule …
2:56 AM Ticket #721 (documentation does not get installed) created by Peter
1:21 AM Changeset [2840] by Peter: bump version to 0.9.1pre
1:21 AM Changeset [2839] by Peter: add missing '.' as we want version number A.B.C rather than A.BC
1:12 AM Changeset [2838] by Peter: merge release 0.9 into trunk
1:07 AM Changeset [2837] by Peter: avoid ancient inclusion guards around '#include <config.h>'
12:57 AM Milestone yat 0.9 completed: This release includes several bug fixes and some new features. The …
12:56 AM SubversionCheckout edited by Peter: 0.9 release (diff)
12:55 AM WikiStart edited by Peter: 0.9 release (diff)
12:52 AM Changeset [2836] by Peter: tagging version 0.9
12:39 AM Changeset [2835] by Peter: spell out 0.9 rather than intruction template A.B
12:27 AM Changeset [2834] by Peter: update release date

9:42 AM Ticket #720 (rng-mt failure) closed by Peter: fixed: (In [2833]) fixes #720
9:42 AM Changeset [2833] by Peter: fixes #720
8:39 AM Ticket #720 (rng-mt failure) created by Peter: Occasionally I get this output: […] It happens about 1/3 or 1/4 of …
7:40 AM Changeset [2832] by Peter: Preparing release 0.9

5:07 PM Ticket #719 (configure silently accepts missing boost libs) closed by Peter: fixed: (In [2830]) add link tests with boost. closes #719
5:07 PM Changeset [2830] by Peter: add link tests with boost. closes #719
5:06 PM Changeset [2829] by Peter: upgrade to latest AX version. backport r2825
9:25 AM Changeset [2828] by Peter: fix identation
8:45 AM Changeset [2827] by Peter: Remove -Itop_srcdir from CPPFLAGS. Automake already adds -Isrcdir to …
6:50 AM Ticket #719 (configure silently accepts missing boost libs) created by Peter: BOOST_SYSTEM_LIB is set to empty string and configure runs through as …
6:12 AM Changeset [2826] by Peter: avoid warning from GCC 4.1

8:20 AM Changeset [2825] by Peter: upgrade to autoconf macro archive 2012.09.08

9:14 AM Ticket #718 (remove convenience library) closed by Peter: fixed: (In [2824]) remove intermediate libraries. Makefiles in corresponding …
9:14 AM Changeset [2824] by Peter: remove intermediate libraries. Makefiles in corresponding …

9:17 AM WikiStart edited by Jari Häkkinen: Linked to 0.9 online documentation (diff)
3:32 AM Ticket #336 (avoid including installed yat) closed by Peter: wontfix: Header files should no longer be removed, so I close this as wontfix
3:28 AM Ticket #284 (hide your members) closed by Peter: wontfix: Nobody has looked at this for 5 yrs and as yat API has stabilized it …
3:12 AM Changeset [2823] by Peter: bumping version to 0.10pre
2:52 AM Changeset [2822] by Peter: new stable branch for 0.9.x
2:50 AM Changeset [2821] by Peter: preparing new stable branch 0.9
2:47 AM Changeset [2820] by Peter: update copyright years

10:56 PM Changeset [2819] by Jari Häkkinen: Migrating fix from http://dev.thep.lu.se/svndigest/changeset/1503. …
3:52 AM Changeset [2818] by Peter: prefer 'if (b)' over 'if (a && b)' when 'b' is a subset of 'a'.
2:46 AM Ticket #718 (remove convenience library) created by Peter: The convenience libraries (e.g. yat/utility/libutility.la) was …
2:38 AM Changeset [2817] by Peter: update copyright years

4:44 AM Changeset [2816] by Peter: change name of function cigar => alignment
4:38 AM Ticket #706 (Generalization of Needleman-Wunsch and Smith-Waterman) closed by Peter: fixed: (In [2815]) closes #706. Implement a generalization of SmithWaternan? …
4:38 AM Changeset [2815] by Peter: closes #706. Implement a generalization of SmithWaternan? and …

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