Timeline



Oct 3, 2012:

1:53 PM Ticket #712 (deprecate SmartPtr) closed by Peter
wontfix: SmartPtr is now only used in one place: in class utility::Index, …
7:20 AM Changeset [2863] by Peter
prefer boost::shared_ptr. refs #712
7:07 AM Changeset [2862] by Peter
prefer boost::shared_ptr. refs #712
6:57 AM Changeset [2861] by Peter
avoid using SmartPtr?; prefer using boost::shared_ptr. refs #712

Sep 30, 2012:

8:59 AM Changeset [2860] by Peter
mention configure options '--with-boost-thread' and …
8:23 AM Changeset [2859] by Peter
fix boost macros to remove usage of tool 'tac' and change file pattern …

Sep 28, 2012:

2:44 AM Ticket #725 (Functor that deletes objects) closed by Peter
fixed: (In [2858]) closes #725
2:44 AM Changeset [2858] by Peter
closes #725
1:17 AM Ticket #726 (inverse function creating map<T, size_t>) closed by Peter
fixed: (In [2857]) closes #726
1:17 AM Changeset [2857] by Peter
closes #726

Sep 27, 2012:

9:38 AM Ticket #726 (inverse function creating map<T, size_t>) created by Peter
There are two inverse functions in stl_utility. One creates …

Sep 26, 2012:

9:48 AM Ticket #725 (Functor that deletes objects) created by Peter
Using boost::shared_ptr it is sometimes useful to be able to override …
3:14 AM Changeset [2856] by Peter
if test fails, skip downstream tests

Sep 25, 2012:

2:30 AM Changeset [2855] by Peter
revert r2829 for m4 boost macros because it depends on tool tac, which …

Sep 24, 2012:

2:00 AM Changeset [2854] by Peter
bump version to 0.9.2pre
1:56 AM Changeset [2853] by Peter
merge patch release 0.9.1 into trunk
1:49 AM Milestone yat 0.9.1 completed
This is a bugfix release. It fixes a severe bug in the Aligner class …
1:48 AM SubversionCheckout edited by Peter
0.9.1 release (diff)
1:47 AM WikiStart edited by Peter
0.9.1 release (diff)
1:45 AM Changeset [2852] by Peter
tagging version 0.9.1
1:28 AM Changeset [2851] by Peter
ensure that we build docs within mc_installcheck as installcheck now …
1:03 AM Changeset [2850] by Peter
mention current version in list of libtool numbers
1:00 AM Changeset [2849] by Peter
update copyright years
12:58 AM Changeset [2848] by Peter
Preparing release 0.9.1

Sep 22, 2012:

12:56 PM Ticket #724 (regression in NeedlemanWunsch) closed by Peter
fixed: (In [2847]) Fixes #724. Adding another test for NeedlemanWunsch?. Fix …
12:56 PM Changeset [2847] by Peter
Fixes #724. Adding another test for NeedlemanWunsch?. Fix bug in NW …
11:30 AM Changeset [2846] by Peter
Merged r2845 into 0.9.x branch and marked alignment.test as XFAIL. …
11:21 AM Changeset [2845] by Peter
Extend test for NeedlemanWunsch? and check alignment score between …
4:04 AM Ticket #724 (regression in NeedlemanWunsch) created by Peter
Comparing speclust output using yat 0.8.2 and yat 0.9 I noticed a …

Sep 21, 2012:

1:38 PM Ticket #723 (CommandLine accepts passed '--no-foo') closed by Peter
fixed: (In [2844]) add test for #723 and implement a fix. Fixes #723
1:38 PM Changeset [2844] by Peter
add test for #723 and implement a fix. Fixes #723
3:43 AM Ticket #723 (CommandLine accepts passed '--no-foo') created by Peter
Surprisingly, CommandLine? accepts passed --no-foo but doesn't accept …
2:38 AM Ticket #722 (yat.pc misses boost libs) closed by Peter
fixed: (In [2843]) fixes #722
2:38 AM Changeset [2843] by Peter
fixes #722
1:38 AM Ticket #722 (yat.pc misses boost libs) created by Peter
Boost libs are missing in the yat.pc file. Should either be in …

Sep 17, 2012:

6:52 AM Changeset [2842] by Peter
remove todo doxygen tags
3:38 AM Ticket #721 (documentation does not get installed) closed by Peter
fixed: (In [2841]) fixes #721. fix install-html-local rule and add a …
3:38 AM Changeset [2841] by Peter
fixes #721. fix install-html-local rule and add a install-check rule …
2:56 AM Ticket #721 (documentation does not get installed) created by Peter
1:21 AM Changeset [2840] by Peter
bump version to 0.9.1pre
1:21 AM Changeset [2839] by Peter
add missing '.' as we want version number A.B.C rather than A.BC
1:12 AM Changeset [2838] by Peter
merge release 0.9 into trunk
1:07 AM Changeset [2837] by Peter
avoid ancient inclusion guards around '#include <config.h>'
12:57 AM Milestone yat 0.9 completed
This release includes several bug fixes and some new features. The …
12:56 AM SubversionCheckout edited by Peter
0.9 release (diff)
12:55 AM WikiStart edited by Peter
0.9 release (diff)
12:52 AM Changeset [2836] by Peter
tagging version 0.9
12:39 AM Changeset [2835] by Peter
spell out 0.9 rather than intruction template A.B
12:27 AM Changeset [2834] by Peter
update release date

Sep 14, 2012:

9:42 AM Ticket #720 (rng-mt failure) closed by Peter
fixed: (In [2833]) fixes #720
9:42 AM Changeset [2833] by Peter
fixes #720
8:39 AM Ticket #720 (rng-mt failure) created by Peter
Occasionally I get this output: […] It happens about 1/3 or 1/4 of …
7:40 AM Changeset [2832] by Peter
Preparing release 0.9

Sep 13, 2012:

12:26 PM Changeset [2831] by Peter
remove debug code

Sep 12, 2012:

5:07 PM Ticket #719 (configure silently accepts missing boost libs) closed by Peter
fixed: (In [2830]) add link tests with boost. closes #719
5:07 PM Changeset [2830] by Peter
add link tests with boost. closes #719
5:06 PM Changeset [2829] by Peter
upgrade to latest AX version. backport r2825
9:25 AM Changeset [2828] by Peter
fix identation
8:45 AM Changeset [2827] by Peter
Remove -Itop_srcdir from CPPFLAGS. Automake already adds -Isrcdir to …
6:50 AM Ticket #719 (configure silently accepts missing boost libs) created by Peter
BOOST_SYSTEM_LIB is set to empty string and configure runs through as …
6:12 AM Changeset [2826] by Peter
avoid warning from GCC 4.1
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