Timeline



Dec 26, 2012:

2:32 AM Changeset [2929] by Peter
add EXIT_SKIP macro. make test compile also --without-samtools
12:20 AM Changeset [2928] by Peter
Support different styles of including bam header files: <bam.h>, …

Dec 21, 2012:

1:06 AM Changeset [2927] by Peter
remove old core dumps in test prologue (to avoid accumulation of …

Dec 20, 2012:

12:06 PM Changeset [2926] by Jari Häkkinen
Added missing include

Dec 19, 2012:

10:41 PM Changeset [2925] by Peter
let bam files depend on Makefile to 1) regenerate bam files when rules …
3:12 PM Changeset [2924] by Peter
cater for older samtools without support for '-o' switch
12:42 PM Changeset [2923] by Jari Häkkinen
Adding missing include
12:34 PM WikiStart edited by Jari Häkkinen
Link to 0.10-beta documentation (diff)
11:30 AM Changeset [2922] by Peter
mention samtools and zlib in README.
8:02 AM Changeset [2921] by Peter
bump version to 0.11pre
7:55 AM Changeset [2920] by Peter
New stable branch for 0.10.x
7:54 AM Changeset [2919] by Peter
update copyright years
7:49 AM Changeset [2918] by Peter
prepare new stable release 0.10
7:44 AM Changeset [2917] by Peter
bump version to 0.9.3pre
7:42 AM Changeset [2916] by Peter
merge patch release 0.9.2 into trunk. Ignore changes in …
7:32 AM Milestone yat 0.9.2 completed
This is a bugfix release [[TicketQuery(...)]] …
7:32 AM SubversionCheckout edited by Peter
release 0.9.2 (diff)
7:30 AM WikiStart edited by Peter
release 0.9.2 (diff)
7:28 AM Changeset [2915] by Peter
tagging version 0.9.2
7:09 AM Changeset [2914] by Peter
setting release date
7:09 AM Changeset [2913] by Peter
Preparing release 0.9.2

Dec 17, 2012:

11:54 AM Changeset [2912] by Peter
docs typo
3:32 AM Changeset [2911] by Peter
accidently included in r2910
3:31 AM Ticket #729 (samtools wrapper classes) closed by Peter
fixed: (In [2910]) improve docs. closes #729
3:31 AM Changeset [2910] by Peter
improve docs. closes #729

Dec 16, 2012:

1:57 PM Changeset [2909] by Peter
avoid creating a MatrixLookupWeighted? from a Matrix as it involves …
7:24 AM Ticket #717 (svndigest utilility functions) closed by Peter
fixed

Dec 15, 2012:

9:30 AM Changeset [2908] by Peter
copy tests from http://dev.thep.lu.se/svndigest code. refs #717
8:48 AM Changeset [2907] by Peter
extend intererface with mode_t as in C api and improve docs. refs #717
7:29 AM Changeset [2906] by Peter
New functions chdir, chmod, copy_file, fnmatch, remove, rename, and …

Dec 14, 2012:

1:03 AM Changeset [2905] by Peter
remove superfluous 'using'
1:00 AM Changeset [2904] by Peter
boost concept check. refs #729
12:40 AM Changeset [2903] by Peter
refs #729. document bam_pair_analyse

Dec 13, 2012:

8:39 AM Changeset [2902] by Peter
test for bam_pair_analyse. refs #729
2:30 AM Changeset [2901] by Peter
make random generators to model adaptable Generators
1:32 AM Changeset [2900] by Peter
remove trailing WS
1:30 AM Changeset [2899] by Peter
function bam_pair_analyse

Dec 12, 2012:

6:13 AM Changeset [2898] by Peter
dox typo

Dec 11, 2012:

8:27 AM Changeset [2897] by Peter
prefer throwing yat::utility::runtime_error. refs #729

Dec 10, 2012:

10:52 PM Changeset [2896] by Peter
improve doc and remove private classes from docs
10:38 PM Changeset [2895] by Peter
add two tests for bam functionality
4:53 AM Changeset [2894] by Peter
fix VPATH build issues

Dec 9, 2012:

8:17 AM Changeset [2893] by Peter
run (also C++) tests in specific test dir so test can create temporary …
8:15 AM Changeset [2892] by Peter
add functions mkdir, mkdir_p, basename, dirname. refs #717
12:53 AM Changeset [2891] by Peter
check for samtools in configure; create bam file in 'make check' if we …

Dec 7, 2012:

9:09 AM Changeset [2890] by Peter
prefer calling base class constructor explicitly
9:06 AM Ticket #730 (binomial random number) closed by Peter
fixed: (In [2889]) Binomial distribution. fixes #730
9:06 AM Changeset [2889] by Peter
Binomial distribution. fixes #730

Dec 5, 2012:

11:06 AM Ticket #730 (binomial random number) created by Peter
I needed to generate random numbers from a binomial distribution and …
7:43 AM Changeset [2888] by Peter
add example SAM file. refs #729
5:18 AM Changeset [2887] by Peter
docs typo
4:43 AM Changeset [2886] by Peter
fast swap for BamRead?
1:02 AM Ticket #728 (documentation displays full absolute include path) closed by Peter
fixed: (In [2885]) fixes #728
1:02 AM Changeset [2885] by Peter
fixes #728

Dec 4, 2012:

3:17 AM Changeset [2884] by Peter
add missing since tags. refs #729

Dec 3, 2012:

1:48 PM Changeset [2883] by Peter
New classes to wrap around functionality provided by samtools. refs #729
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