Timeline
Jan 31, 2013:
- 8:15 AM Changeset [2979] by
- extending test for BamRead::cigar
- 6:59 AM Ticket #751 (OutBamFile::write() ignores return value from samwrite) created by
- Function should check return value and throw if error is detected.
- 4:16 AM Ticket #750 (update svndigest:ignore properties) created by
- The code statistics is now generated with svndigest 0.10, which …
Jan 30, 2013:
- 2:31 AM Changeset [2978] by
- fix docs typos
- 1:50 AM Ticket #749 (asserts are turned on (default)) closed by
- fixed: (In [2977]) fixes #749. turn off assertions (default).
- 1:50 AM Changeset [2977] by
- fixes #749. turn off assertions (default).
- 1:47 AM Ticket #749 (asserts are turned on (default)) created by
- The default behaviour has previously been that assertions are turned …
Jan 29, 2013:
- 2:16 PM Ticket #748 (SKIP yat_pc_test.sh when --without-samtools) created by
- When configured --without-samtools, test yat_pc_test.sh should be …
- 2:11 PM Changeset [2976] by
- use --static switch to avoid failure on OSX4
Jan 28, 2013:
- 11:40 PM Ticket #745 (Symbol not found: _bam_nt16_rev_table) reopened by
- I confused my different test machines and have to reopen this ticket. …
- 9:57 PM Ticket #747 (doxygen complains about yat's doxygen config file) closed by
- fixed: (In [2975]) Fixes #747
- 9:57 PM Changeset [2975] by
- Fixes #747
- 9:57 PM Changeset [2974] by
- Addresses #747
- 9:54 PM Changeset [2973] by
- Adresses #747
- 9:51 PM Ticket #747 (doxygen complains about yat's doxygen config file) created by
- Doxygen output: warning: Tag `HTML_ALIGN_MEMBERS' at line 490 of file …
- 12:09 AM Ticket #745 (Symbol not found: _bam_nt16_rev_table) closed by
- fixed
Jan 26, 2013:
- 7:53 AM Changeset [2972] by
- refs #745. Implement a workaround when bam_nt16_rev_table is not …
Jan 25, 2013:
- 5:39 AM Ticket #746 (non-const access to data in BamRead) created by
-
I want to modify my bam reads. Everything in
coreis modifiable via …
Jan 24, 2013:
- 1:46 PM Changeset [2971] by
- make docs more vaguer on behaviour of bam iterators working on same …
- 1:44 PM Ticket #744 (documentation claims BamReadIterators are not independent) closed by
- invalid
- 12:35 PM Changeset [2970] by
- surround test1 call with #ifdef HAVE_LIBBAM since test1 is not …
- 12:59 AM Changeset [2969] by
- update copyright years
- 12:55 AM Changeset [2968] by
- add doxygen relates tag
- 12:41 AM Ticket #745 (Symbol not found: _bam_nt16_rev_table) created by
- Ideally we should use that table, but when not available (check at …
Jan 23, 2013:
- 10:57 PM Changeset [2967] by
- Includes needed in openSUSE 12.2
- 10:42 PM Changeset [2966] by
- Includes needed in openSUSE 12.2
- 5:58 AM Changeset [2965] by
- add doxygen tag relates for BamRead?
- 2:25 AM Ticket #744 (documentation claims BamReadIterators are not independent) created by
- Docs for BamReadIterator claims "Also two BamReadIterator working …
Jan 22, 2013:
- 5:49 AM Changeset [2964] by
- prefer quoting like 'this' and not like `this'
Jan 21, 2013:
- 8:50 AM Ticket #742 (add void constructors to compose functor) closed by
- fixed: fixed in [2963]
- 8:36 AM Changeset [2963] by
- closes #472. Defaut constructors in compose functors.
- 2:38 AM Ticket #743 (BamRead::mtid is not implemented) closed by
- fixed: (In [2962]) fixes #743
- 2:38 AM Changeset [2962] by
- fixes #743
- 2:37 AM Ticket #743 (BamRead::mtid is not implemented) created by
- BamRead::mtid(void) is not implemented. Workaround is to use to use …
Jan 18, 2013:
Jan 17, 2013:
- 9:22 AM Changeset [2961] by
- post release admin
- 9:19 AM Changeset [2960] by
- merge patch release 0.10.1 into trunk
- 9:08 AM Milestone yat 0.10.1 completed
- Bug fix release.
- 9:07 AM SubversionCheckout edited by
- release 0.10.1 (diff)
- 9:06 AM WikiStart edited by
- release 0.10.1 (diff)
- 9:02 AM Changeset [2959] by
- tagging version 0.10.1
- 8:31 AM Changeset [2958] by
- prepare release 0.10.1
- 7:55 AM Ticket #741 (MergeIterator) created by
- I need this for BamReadIterator but no reason to limit to …
- 2:17 AM Changeset [2957] by
- update copyright years
- 2:14 AM Changeset [2956] by
- update NEWS
- 2:00 AM Changeset [2955] by
- refs #736. Fix creation of yat.pc
Jan 16, 2013:
- 9:33 AM Tickets #733,736 batch updated by
- fixed: (In [2954]) fixes #733 and #736. Do not link -lbam into libyat.la, but …
- 9:33 AM Changeset [2954] by
- fixes #733 and #736. Do not link -lbam into libyat.la, but do mention …
- 8:39 AM Ticket #740 (BamHeader::target_length(size_t) not implemented) closed by
- fixed: (In [2953]) implement BamHeader::target_length(). fixes #740
- 8:39 AM Changeset [2953] by
- implement BamHeader::target_length(). fixes #740
- 1:07 AM Ticket #740 (BamHeader::target_length(size_t) not implemented) created by
- 12:53 AM Ticket #739 (bam_parse_region with yat interface) created by
- I'm using yat's interface against samtools and wanted to use …
Jan 15, 2013:
- 9:15 AM Ticket #738 (Functor to filter BamReads) created by
- Quite often one want to iterate through a bam file and ignore certain …
- 5:50 AM Ticket #737 (test [in configure] whether libs can be used to create shared libyat) created by
- spinn off from #733 To solve problems reported in ticket #733 we …
Jan 11, 2013:
- 7:01 AM Ticket #716 (look for openblas in configure) closed by
- fixed: (In [2952]) look for openblas. closes #716
- 7:01 AM Changeset [2952] by
- look for openblas. closes #716
- 2:33 AM Changeset [2951] by
- add deps for lazycheck
- 2:24 AM Ticket #734 (test yat.pc) closed by
- fixed: (In [2950]) test for yat.pc. closes #734
- 2:24 AM Changeset [2950] by
- test for yat.pc. closes #734
Jan 10, 2013:
- 9:21 AM Ticket #736 (-lbam and -lz are not mentioned in yat.pc) created by
- bam and z should be mentioned in Libs.private, which is only used with …
- 2:29 AM Changeset [2949] by
- comments describing defines from bam.h
- 2:22 AM Changeset [2948] by
- prefer AC_SEARCH_LIBS over AC_CHECK_LIB
- 2:09 AM Ticket #735 (missing HAVE_SAMTOOLS_BAM_H in config_public.h.in) closed by
- fixed: (In [2947]) #define/#undef HAVE_SAMTOOL_BAM_H in config_public.h.in …
- 2:09 AM Changeset [2947] by
- #define/#undef HAVE_SAMTOOL_BAM_H in config_public.h.in and remove …
- 2:02 AM Ticket #735 (missing HAVE_SAMTOOLS_BAM_H in config_public.h.in) created by
- Changeset r2928 introduced some defines in config_public.h.in that is …
- 12:48 AM Ticket #734 (test yat.pc) created by
- Usage of the yat.pc file is not tested. We should add a test that uses …
Jan 9, 2013:
- 10:36 AM Changeset [2946] by
- avoid duplication
- 5:58 AM Ticket #733 (build failure with static libbam) created by
- I get the following error message when trying to build yat […] …
- 4:40 AM Ticket #701 (avoid release merge conflicts) closed by
- wontfix: The main problem, undetected merges of PATCH_VERSION updates, was …
Jan 8, 2013:
- 8:05 AM Ticket #732 (use AC_CONFIG_MACRO_DIRS) created by
- New versions of autotools recommend using […] instead of […] and …
Jan 7, 2013:
- 5:30 AM Changeset [2945] by
- avoid warning from Automake
Jan 4, 2013:
- 7:40 AM Changeset [2944] by
- bumping version to 0.10.1pre
- 7:38 AM Changeset [2943] by
- merge release 0.10 into trunk
- 7:27 AM Milestone yat 0.10 completed
- Introduction of some wrapper classes for …
- 7:27 AM SubversionCheckout edited by
- release 0.10 (diff)
- 7:24 AM WikiStart edited by
- release 0.10 (diff)
- 7:15 AM Changeset [2942] by
- tagging version 0.10
- 6:44 AM Changeset [2941] by
- correct typo
- 6:42 AM Changeset [2940] by
- update copyright years
- 6:37 AM Changeset [2939] by
- Prepare 0.10 release
Jan 3, 2013:
- 9:33 AM Ticket #731 (yat_revision_header fails with Automake 1.13) closed by
- fixed: (In [2938]) unset some make variables in tests. fixes #731
- 9:33 AM Changeset [2938] by
- unset some make variables in tests. fixes #731
- 1:48 AM Ticket #731 (yat_revision_header fails with Automake 1.13) created by
- Test log contains […] looks like make communicates some variable …
Jan 2, 2013:
- 12:09 AM Changeset [2937] by
- improve doc
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