Timeline



Feb 23, 2013:

6:35 AM Changeset [2989] by Peter
speedup BamRead::cigar for case when size is not modified.
6:24 AM Changeset [2988] by Peter
bam1_seq_seti was not defined in samtools 0.1.18. This workarounds …

Feb 22, 2013:

8:05 AM Ticket #752 (avoid installing header files conditionally) created by Peter
In yat 0.10 some header files (rleated to samtools) are not installed …

Feb 18, 2013:

9:13 AM Changeset [2987] by Peter
add test for modify element in sequence. refs #746
9:07 AM Changeset [2986] by Peter
merge 0.10-stable branch into trunk
8:36 AM Changeset [2985] by Peter
refs #746. added function to modify one element in sequence

Feb 5, 2013:

1:09 AM Changeset [2984] by Peter
move newlines to make code more eye friendly

Feb 4, 2013:

2:10 PM Ticket #751 (OutBamFile::write() ignores return value from samwrite) closed by Peter
fixed: (In [2983]) fixes #751. throw if OutBamFile::write fails
2:10 PM Changeset [2983] by Peter
fixes #751. throw if OutBamFile::write fails
1:51 PM Changeset [2982] by Peter
fix typo introduced in r2980
12:24 PM Ticket #748 (SKIP yat_pc_test.sh when --without-samtools) closed by Peter
fixed: (In [2981]) Skip yat_pc_test.sh when -without-samtools. fixes #748
12:24 PM Changeset [2981] by Peter
Skip yat_pc_test.sh when -without-samtools. fixes #748
8:36 AM Changeset [2980] by Peter
add syntax-check rule (included in maintainer-check), add two missing …

Jan 31, 2013:

8:15 AM Changeset [2979] by Peter
extending test for BamRead::cigar
6:59 AM Ticket #751 (OutBamFile::write() ignores return value from samwrite) created by Peter
Function should check return value and throw if error is detected.
4:16 AM Ticket #750 (update svndigest:ignore properties) created by Peter
The code statistics is now generated with svndigest 0.10, which …

Jan 30, 2013:

2:31 AM Changeset [2978] by Peter
fix docs typos
1:50 AM Ticket #749 (asserts are turned on (default)) closed by Peter
fixed: (In [2977]) fixes #749. turn off assertions (default).
1:50 AM Changeset [2977] by Peter
fixes #749. turn off assertions (default).
1:47 AM Ticket #749 (asserts are turned on (default)) created by Peter
The default behaviour has previously been that assertions are turned …

Jan 29, 2013:

2:16 PM Ticket #748 (SKIP yat_pc_test.sh when --without-samtools) created by Peter
When configured --without-samtools, test yat_pc_test.sh should be …
2:11 PM Changeset [2976] by Peter
use --static switch to avoid failure on OSX4

Jan 28, 2013:

11:40 PM Ticket #745 (Symbol not found: _bam_nt16_rev_table) reopened by Jari Häkkinen
I confused my different test machines and have to reopen this ticket. …
9:57 PM Ticket #747 (doxygen complains about yat's doxygen config file) closed by Jari Häkkinen
fixed: (In [2975]) Fixes #747
9:57 PM Changeset [2975] by Jari Häkkinen
Fixes #747
9:57 PM Changeset [2974] by Jari Häkkinen
Addresses #747
9:54 PM Changeset [2973] by Jari Häkkinen
Adresses #747
9:51 PM Ticket #747 (doxygen complains about yat's doxygen config file) created by Jari Häkkinen
Doxygen output: warning: Tag `HTML_ALIGN_MEMBERS' at line 490 of file …
12:09 AM Ticket #745 (Symbol not found: _bam_nt16_rev_table) closed by Peter
fixed

Jan 26, 2013:

7:53 AM Changeset [2972] by Peter
refs #745. Implement a workaround when bam_nt16_rev_table is not …

Jan 25, 2013:

5:39 AM Ticket #746 (non-const access to data in BamRead) created by Peter
I want to modify my bam reads. Everything in core is modifiable via …
Note: See TracTimeline for information about the timeline view.