Timeline



Apr 8, 2013:

6:31 AM Changeset [3027] by Peter
don't mention cigar in docs when function is called alignment

Apr 6, 2013:

9:31 AM Changeset [3026] by Peter
add function to modify a base quality (BamRead?). refs #746
9:06 AM Ticket #689 (replace one_sided_P with lower_P and upper_P) closed by Peter
fixed: (In [3025]) implement tTest::p_right(). closes #689
9:06 AM Changeset [3025] by Peter
implement tTest::p_right(). closes #689
8:38 AM Ticket #755 (tTest::score should be const) closed by Peter
fixed: (In [3024]) fixes #755
8:38 AM Changeset [3024] by Peter
fixes #755
4:35 AM Ticket #754 (Why is ROC::area not const?) closed by Peter
fixed: (In [3023]) closes #754. ROC::area() is now const
4:35 AM Changeset [3023] by Peter
closes #754. ROC::area() is now const

Apr 4, 2013:

8:51 AM ReleaseProcedure edited by Peter
(diff)
7:09 AM Ticket #756 (yat-pc-check is not working in parallel build) closed by Peter
fixed: fixed in [3022]
7:07 AM Changeset [3022] by Peter
avoid running mc-local targets in parallel (as they conflict with each …
6:59 AM Changeset [3021] by Peter
fix script to do what's intended
6:58 AM Changeset [3020] by Peter
fix typo
6:53 AM Milestone yat 0.10.2 completed
bug fix release
6:52 AM SubversionCheckout edited by Peter
version 0.10.2 (diff)
6:51 AM WikiStart edited by Peter
version 0.10.2 (diff)
6:50 AM Changeset [3019] by Peter
bumping version to 0.10.3pre
6:46 AM Changeset [3018] by Peter
merge patch release 0.10.2 into trunk
6:28 AM Changeset [3017] by Peter
tagging version 0.10.2
6:17 AM Ticket #756 (yat-pc-check is not working in parallel build) created by Peter
The reason is that the test removes files, reruns configure, and runs …
4:58 AM Changeset [3016] by Peter
avoid make warnings in parallel build
4:45 AM Changeset [3015] by Peter
prefer April not Apr in NEWS
4:43 AM Changeset [3014] by Peter
update copyright years
4:39 AM Changeset [3013] by Peter
preparing 0.10.2 release

Apr 3, 2013:

10:36 PM Changeset [3012] by Peter
typo
10:23 AM Ticket #745 (Symbol not found: _bam_nt16_rev_table) closed by Peter
fixed
1:41 AM Changeset [3011] by Peter
leftover from prev commit

Apr 2, 2013:

11:24 PM ReleaseProcedure edited by Peter
use new make target (diff)
10:50 PM Changeset [3010] by Peter
move components in tag_and_release to make target so Make variables …
9:37 PM Changeset [3009] by Peter
soften installcheck on html docs
1:39 PM Changeset [3008] by Peter
avoid spurious test error: use yat-config --ldflags when linking. refs #745

Apr 1, 2013:

10:46 AM Changeset [3007] by Peter
actually deprecate ROC::p_value_one_sided(). refs #689
10:35 AM Ticket #755 (tTest::score should be const) created by Peter
Same motivation as for #754.
10:15 AM Changeset [3006] by Peter
deprecate ROC::p_value, first versions of p_left and p_right (refs …
10:02 AM Ticket #754 (Why is ROC::area not const?) created by Peter
From an outside perspective the function only accesses the area. The …

Mar 24, 2013:

9:39 AM Changeset [3005] by Peter
refs #689. Deprecate PearsonCorrelation::p_value_one_sided. Replace it …
1:51 AM Changeset [3004] by Peter
refs #689. Deprecate Fisher::one_sided_p; implement Fisher::left_p and …

Mar 20, 2013:

11:14 AM Changeset [3003] by Peter
prefer flat_namespace on darwin (OSX). refs #745
11:02 AM Ticket #686 (KS for one class) closed by Peter
fixed: (In [3002]) closes #686
11:02 AM Changeset [3002] by Peter
closes #686

Mar 19, 2013:

1:38 AM Ticket #686 (KS for one class) reopened by Peter
The current version only checks |F(x) - x| at values of data values …
1:22 AM Changeset [3001] by Peter
simplify docs

Mar 17, 2013:

6:53 AM Ticket #753 (KolmogorovSmirnov::remove doesn't remove data) closed by Peter
fixed: (In [3000]) fixes bug in KolmogorovSmirnov::remove. closes #753.
6:53 AM Changeset [3000] by Peter
fixes bug in KolmogorovSmirnov::remove. closes #753.
6:19 AM Ticket #753 (KolmogorovSmirnov::remove doesn't remove data) created by Peter

Mar 14, 2013:

2:30 PM Ticket #739 (bam_parse_region with yat interface) closed by Peter
fixed: (In [2999]) closes #739. Two new functions in BamHeader?: tid(string) …
2:30 PM Changeset [2999] by Peter
closes #739. Two new functions in BamHeader?: tid(string) and parse_region.
9:08 AM Ticket #686 (KS for one class) closed by Peter
fixed: (In [2998]) New class KolmogorovSmirnovOneSample?. closes #686
9:08 AM Changeset [2998] by Peter
New class KolmogorovSmirnovOneSample?. closes #686
7:12 AM Changeset [2997] by Peter
improve error message
5:55 AM Changeset [2996] by Peter
docs typo

Mar 13, 2013:

12:30 PM Ticket #741 (MergeIterator) closed by Peter
fixed: (In [2995]) closes #741. New class MergeIterator?
12:30 PM Changeset [2995] by Peter
closes #741. New class MergeIterator?

Mar 10, 2013:

2:04 PM Ticket #738 (Functor to filter BamReads) closed by Peter
fixed: (In [2994]) new class BamReadFilter?. closes #738
2:04 PM Changeset [2994] by Peter
new class BamReadFilter?. closes #738
8:14 AM Ticket #704 (throw rather than abort in assertions) closed by Peter
wontfix: note to myself: use gdb to trace down the bug
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