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12:52 AM Ticket #774 (iterate bam file over set of regions) created by Peter: Creating a bam read iterator is relatively expensive because it has to …

6:22 AM Ticket #773 (Weighted version of Binomial LRT) created by Peter: related to ticket #769 See discussion in #769
3:07 AM Ticket #769 (class calculating likelihood ratio test for binomial models) closed by Peter: fixed: (In [3138]) change name of class and implement function llr(). closes #769
3:07 AM Changeset [3138] by Peter: change name of class and implement function llr(). closes #769

5:11 AM Ticket #772 (calculate mutual information) closed by Peter: fixed: (In [3137]) closes #772. new function that calculates mutual information
5:11 AM Changeset [3137] by Peter: closes #772. new function that calculates mutual information
1:18 AM Changeset [3136] by Peter: fix docs and remove WS

8:58 AM Changeset [3135] by Peter: add function that calculates entropy from a range
7:12 AM Changeset [3134] by Peter: refs #769 skeleton for new class LoglikelihoodRatioTestBinomial? (not …
7:00 AM Ticket #772 (calculate mutual information) created by Peter: As part of ticket #769 is to calculate the mutual information. Rather …

2:06 AM Changeset [3133] by Peter: yat-config: mention that YAT_CBLAS_LIB is overideable; doxygen docs: …

2:29 AM ReleaseProcedure edited by Peter: (diff)
2:26 AM Changeset [3132] by Peter: move ReleaseProcedure to file README.developer

8:44 AM Changeset [3131] by Peter: bump version to 0.11.1pre
8:38 AM Changeset [3130] by Peter: merge release 0.11 into trunk
8:12 AM Milestone yat 0.11 completed: This release adds some more functionality especially providing a more …
8:10 AM SubversionCheckout edited by Peter: simplify (diff)
8:01 AM SubversionCheckout edited by Peter: (diff)
7:58 AM WikiStart edited by Peter: yat 0.11 release (diff)
7:55 AM Changeset [3129] by Peter: tagging version 0.11
7:34 AM Changeset [3128] by Peter: prepare 0.11 release

11:48 AM Changeset [3126] by Jari Häkkinen: Relaxing requirement on autoconf, tests passes with 2.63
8:16 AM Changeset [3125] by Peter: try <bam.h> before <bam/bam.h>
8:14 AM Changeset [3124] by Peter: avoid using m4_map_args_w, which doesn't work with autoconf 2.63

3:05 PM Changeset [3123] by Peter: turn off test that linking against a static lib when creating a …
2:18 PM Changeset [3122] by Peter: define libdir directly rather than via prefix
1:47 PM Changeset [3121] by Peter: always abort if command fails
12:29 PM Changeset [3120] by Jari Häkkinen: Fixing disambiguity of -i option om mac (on mac a of another option …
11:55 AM Changeset [3119] by Jari Häkkinen: Removing html code disrupting crosslink with doxygen 1.8.5 on my mac.
8:51 AM WikiStart edited by Jari Häkkinen: Html docs are now autogenerated for 0.11.x branch (diff)
8:46 AM Changeset [3118] by Peter: convenient targets for releaser
1:12 AM Changeset [3117] by Peter: Bump version to 0.12pre
1:02 AM Changeset [3116] by Peter: New stable branch for 0.11.x series
1:00 AM Changeset [3115] by Peter: Prepare 0.11-stable branch
12:51 AM Changeset [3114] by Peter: update copyright years

10:47 AM Ticket #737 (test [in configure] whether libs can be used to create shared libyat) closed by Peter: fixed: (In [3113]) change YAT_USE_LIBTOOL_[PUSH|POP] so it only affects the …
10:47 AM Changeset [3113] by Peter: change YAT_USE_LIBTOOL_[PUSH|POP] so it only affects the linking tests …
6:02 AM Changeset [3112] by Peter: In tests issue configure with --disable-shared/--disable-static if yat …
2:22 AM Changeset [3111] by Peter: refs #737 configure.ac: Define new variables YAT_LIBS, …
12:42 AM Changeset [3110] by Peter: Fix test of YAT_LT_LINK_IFELSE. The macro/linking worked also against …

12:07 PM Changeset [3109] by Peter: correct dependency
11:20 AM Ticket #771 (test version number of libyat in shell tests that link against libyat) created by Peter: Some of the shell tests link against yat. To avoid that we …
11:06 AM Changeset [3108] by Peter: Fix spurious test failure in yat_m4_with_bam_test.sh. Previously the …

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