Timeline



Dec 10, 2013:

4:46 AM Ticket #775 (uncompressed OutBamFile) created by Peter
In libbam one can set the compression level, and e.g. 'u' in mode

Dec 6, 2013:

12:52 AM Ticket #774 (iterate bam file over set of regions) created by Peter
Creating a bam read iterator is relatively expensive because it has to …

Dec 2, 2013:

5:21 AM Changeset [3139] by Peter
improve docs

Nov 29, 2013:

6:22 AM Ticket #773 (Weighted version of Binomial LRT) created by Peter
related to ticket #769 See discussion in #769
3:07 AM Ticket #769 (class calculating likelihood ratio test for binomial models) closed by Peter
fixed: (In [3138]) change name of class and implement function llr(). closes #769
3:07 AM Changeset [3138] by Peter
change name of class and implement function llr(). closes #769

Nov 28, 2013:

5:11 AM Ticket #772 (calculate mutual information) closed by Peter
fixed: (In [3137]) closes #772. new function that calculates mutual information
5:11 AM Changeset [3137] by Peter
closes #772. new function that calculates mutual information
1:18 AM Changeset [3136] by Peter
fix docs and remove WS

Nov 27, 2013:

8:58 AM Changeset [3135] by Peter
add function that calculates entropy from a range
7:12 AM Changeset [3134] by Peter
refs #769 skeleton for new class LoglikelihoodRatioTestBinomial? (not …
7:00 AM Ticket #772 (calculate mutual information) created by Peter
As part of ticket #769 is to calculate the mutual information. Rather …

Nov 24, 2013:

2:06 AM Changeset [3133] by Peter
yat-config: mention that YAT_CBLAS_LIB is overideable; doxygen docs: …

Nov 19, 2013:

2:29 AM ReleaseProcedure edited by Peter
(diff)
2:26 AM Changeset [3132] by Peter
move ReleaseProcedure to file README.developer

Nov 18, 2013:

8:44 AM Changeset [3131] by Peter
bump version to 0.11.1pre
8:38 AM Changeset [3130] by Peter
merge release 0.11 into trunk
8:12 AM Milestone yat 0.11 completed
This release adds some more functionality especially providing a more …
8:10 AM SubversionCheckout edited by Peter
simplify (diff)
8:01 AM SubversionCheckout edited by Peter
(diff)
7:58 AM WikiStart edited by Peter
yat 0.11 release (diff)
7:55 AM Changeset [3129] by Peter
tagging version 0.11
7:34 AM Changeset [3128] by Peter
prepare 0.11 release

Nov 13, 2013:

12:52 AM Changeset [3127] by Peter
update copyright years

Nov 12, 2013:

11:48 AM Changeset [3126] by Jari Häkkinen
Relaxing requirement on autoconf, tests passes with 2.63
8:16 AM Changeset [3125] by Peter
try <bam.h> before <bam/bam.h>
8:14 AM Changeset [3124] by Peter
avoid using m4_map_args_w, which doesn't work with autoconf 2.63
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