Timeline



Dec 23, 2013:

7:05 AM Changeset [3152] by Peter
add missing source file. refs #770
7:04 AM Changeset [3151] by Peter
implement OstreamIterator? refs #770
7:03 AM Changeset [3150] by Peter
test that BamWriteIterator? fulfills requirements defined in …
7:02 AM Changeset [3149] by Peter
change test_output_iterator: there is requirement that output …
6:59 AM Changeset [3148] by Peter
remove white-space
6:58 AM Changeset [3147] by Peter
add missing public

Dec 19, 2013:

3:19 AM Changeset [3146] by Peter
fixed docs

Dec 18, 2013:

9:23 AM Changeset [3145] by Peter
bumping version to 0.11.2pre
9:18 AM Changeset [3144] by Peter
merge patch release 0.11.1 into trunk
9:07 AM SubversionCheckout edited by Peter
(diff)
9:06 AM WikiStart edited by Peter
(diff)
9:05 AM Milestone yat 0.11.1 completed
Bugfix release
9:04 AM Changeset [3143] by Peter
tagging version 0.11.1
8:39 AM Changeset [3142] by Peter
prepare release

Dec 16, 2013:

11:16 AM Changeset [3141] by Peter
record bug #776 in NEWS
11:14 AM Ticket #776 (BamHeader::tid incorrect at first call) closed by Peter
fixed: (In [3140]) fixes #776 a bug in function BamHeader::tid
11:14 AM Changeset [3140] by Peter
fixes #776 a bug in function BamHeader::tid
6:37 AM Ticket #776 (BamHeader::tid incorrect at first call) created by Peter
It seems like BamHeader::tid is not returning a correct value first …

Dec 10, 2013:

4:46 AM Ticket #775 (uncompressed OutBamFile) created by Peter
In libbam one can set the compression level, and e.g. 'u' in mode

Dec 6, 2013:

12:52 AM Ticket #774 (iterate bam file over set of regions) created by Peter
Creating a bam read iterator is relatively expensive because it has to …

Dec 2, 2013:

5:21 AM Changeset [3139] by Peter
improve docs

Nov 29, 2013:

6:22 AM Ticket #773 (Weighted version of Binomial LRT) created by Peter
related to ticket #769 See discussion in #769
3:07 AM Ticket #769 (class calculating likelihood ratio test for binomial models) closed by Peter
fixed: (In [3138]) change name of class and implement function llr(). closes #769
3:07 AM Changeset [3138] by Peter
change name of class and implement function llr(). closes #769

Nov 28, 2013:

5:11 AM Ticket #772 (calculate mutual information) closed by Peter
fixed: (In [3137]) closes #772. new function that calculates mutual information
5:11 AM Changeset [3137] by Peter
closes #772. new function that calculates mutual information
1:18 AM Changeset [3136] by Peter
fix docs and remove WS

Nov 27, 2013:

8:58 AM Changeset [3135] by Peter
add function that calculates entropy from a range
7:12 AM Changeset [3134] by Peter
refs #769 skeleton for new class LoglikelihoodRatioTestBinomial? (not …
7:00 AM Ticket #772 (calculate mutual information) created by Peter
As part of ticket #769 is to calculate the mutual information. Rather …

Nov 24, 2013:

2:06 AM Changeset [3133] by Peter
yat-config: mention that YAT_CBLAS_LIB is overideable; doxygen docs: …
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